Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq12187 132 1e-25 seq195 131 4e-25 seq8895 122 2e-22 >seq12187 Length=9842 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| || ||||| || || |||| |||||| || |||| ||| Sbjct 9625 ACGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCCAGAGT 9684 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||| || || ||||||||||| || || || | || || |||||||| || || || Sbjct 9685 GCGCCCGTCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGGATGCC 9744 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||| || || ||||| |||||| || || ||||||||| | ||||| || | Sbjct 9745 CTCCTTATCCTGAATCTTGGCCTTCACGTTGTCAATAGTGTCTGAGCTCTCCACCTCCAG 9804 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||| ||||| || || | ||||||| ||| Sbjct 9805 CGTGATGGTCTTCCCGGTGAGGGTTTTTACGAA 9837 >seq195 Length=29407 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || ||||||||||| | ||||||||| |||| |||||||| ||||| | || || || Sbjct 27193 GTTGATTCTTTTTGTATATTGTAATCACCCAATGTTCTCCCGTCTTCCAATTGTTTTCCT 27134 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || || | ||||||||||||||| || || |||||||| || ||||| || ||| Sbjct 27133 GCAAAAATCAATCGTTGTTGGTCGGGTGGCATTCCTTCCTTATCCTGGATTTTAGACTTT 27074 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || || || || ||||| | ||| ||||| | || || || || || || |||||| Sbjct 27073 ACGTTATCTATCGTATCTGAAGATTCAACGTCGAGTGTTATAGTTTTACCTGTTAAAGTT 27014 Query 225697 TTTATGAACACTTGCAT 225713 || || || | |||||| Sbjct 27013 TTGATAAATATTTGCAT 26997 >seq8895 Length=8815 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| ||||| ||||||||||||| |||||||| |||| || | ||| ||| Sbjct 791 AGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCCAGTGTCCGCCCGTCT 732 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || || ||||| || | || ||||||||| || || || ||||| |||||| Sbjct 731 TCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGGATTCCTTCTTTGTCT 672 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||| || || || ||||| || | || || || || ||||| ||| Sbjct 671 TGAATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTACCTCCAAGGTGATGGTC 612 Query 225682 TTGCCCGTCAAAGTTTT 225698 || || || | ||||| Sbjct 611 TTACCAGTAAGCGTTTT 595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191916314888642