Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq195 91.5 1e-13 >seq195 Length=29407 Score = 91.5 bits (100), Expect = 1e-13 Identities = 171/250 (68%), Gaps = 5/250 (2%) Strand=Plus/Minus Query 101027 AACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCT 101086 ||||| | || || |||||||||||||| ||||||||||| ||| ||| | ||| Sbjct 27208 AACACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCCAATGTTCTCCCGTCT 27149 Query 101087 TCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCG 101146 ||||||||||| || ||| | || | | ||||||||| |||| ||||| || || Sbjct 27148 TCCAATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGCATTCCTTCCTTATCC 27089 Query 101147 GCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTT 101206 ||||| || || | | | ||| |||| || |||| || |||||| Sbjct 27088 TGGATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCAACGTCGAGTGTTATAGTT 27029 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCATTATT--ACAATATATTTTTTA---CTTT 101261 || || || || ||||| ||||| |||||||| | | | | |||||| | || | | Sbjct 27028 TTACCTGTTAAAGTTTTGATAAATATTTGCATGAATGGATAGTATATTATATAAACATAT 26969 Query 101262 GTATATATAT 101271 ||||||||| Sbjct 26968 ATATATATAT 26959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409459877123937