Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq30393 116 5e-21 >seq30393 Length=6106 Score = 116 bits (128), Expect = 5e-21 Identities = 596/937 (64%), Gaps = 38/937 (4%) Strand=Plus/Plus Query 46323 TGACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCC 46382 || ||||||||| ||| |||||||| || | ||| || ||||| ||||| || || Sbjct 855 TGCCATAACTCCAGCTTTCGCATATTCACCGACTCTTTTTTCAAAAAAGTTAGTCTTTCC 914 Query 46383 TTCCAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAA 46442 ||||| ||||||||||||||||| || ||||| | | | || | | | Sbjct 915 ATCCAAGCTGATATTTTCCATAAAATCGAATGGATTCTTTGTTGCAAAGATAATAGAATA 974 Query 46443 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACA 46502 ||| |||| | | | || ||||||||||||||| || || ||| | || Sbjct 975 TCCCAATTGTTTTAATAATCGATCTGCAACGAATTCGATGTATTCCGACATTAATTTTTG 1034 Query 46503 ATTCATTCCTATGAGTTTGACC-GGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGA 46561 |||||| || || | | ||| || | | || || | ||| |||| ||| | || Sbjct 1035 ATTCATACCAATCA-TCCGACATGGGATTGATTCTGTGATAAATTCTTTTTCGTTCTGGA 1093 Query 46562 CAGCATC-----CGATATTATCGA----TGTTACTG----TTTCCTCACTTGGTGGATGC 46608 |||| || ||||||||| || |||| ||| |||||| | ||| Sbjct 1094 CAGCTTCAGATACGATATTATGGACTATTGTTTCTGAAGGTTTCCTTTTTAGGTA----- 1148 Query 46609 ATCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATT 46668 || ||| || | | | || || || || ||| | ||||||||||| || Sbjct 1149 ATGAAA------AAGAGTTA-CA-GCGAACTCTTGATGCAATCCTTCATCTCTTGATATC 1200 Query 46669 AATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCC 46728 || || || ||||| | || || ||||| || || || ||||| | ||||||||| || Sbjct 1201 AACTCATTRGAAAAAGAAAGACCGGGCATCAGACCTCGTTTTTTCAACCAAAATATGGCA 1260 Query 46729 GCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCG 46788 ||| || |||||||| | || ||||| ||| ||| || || | | | ||| || Sbjct 1261 CAGAAGGAACCAGAAAATAGAATACCTTCCACACACGCAAACGCTATTAAACGTTCTGCG 1320 Query 46789 TAACTGGCATCATTATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848 | | ||| |||| ||||| |||||||||| | || ||||| || |||| Sbjct 1321 AACGCCGTATCTTTATTGATCCATTTTTGAGCCCAGTATGCTTTTTTTGAAACCGAAGGG 1380 Query 46849 ATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCT 46908 || || | || |||||||| ||| | |||| | || ||| | ||| |||| Sbjct 1381 ATGGTGTGAATCGCATTAAATAGATGAATCTTTTGTGCGTGATTTTTTATGTATCGATCT 1440 Query 46909 ATTAAAAGACTATACATTTCTGA--ATGAATGTTTTCAATAGCCATCTGAAATCCGTAAA 46966 || || | || |||| ||||| ||||| ||| | ||| | | ||||| Sbjct 1441 ATCAATAAGCTGTACA--TCTGACTGTGAATAGATTCGTTGTATTGTTGATAACTGTAAA 1498 Query 46967 AACATCTTGCTTCAGTAATCTGTACCTCTGTAC-AAAATCGTTCAGAC-AAATTCTCATT 47024 | | ||||| | ||| || || || || ||||| ||| | | | ||| ||||| Sbjct 1499 AGGCACGAGCTTCTGGAATTTGCACTTCATCACTAAAAT--TTCTGGCGAGATTTTCATT 1556 Query 47025 CACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATC 47084 || || ||||| | || || |||||||||| || | || ||| ||| |||| Sbjct 1557 AACAATCCCATCGGACCCTGCGAAGAATGCCAATATATTGCTTATGAAAAATTGTTCA-G 1615 Query 47085 GGTAGTCAGTTTATT-CCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCC 47143 || ||| ||| ||| ||| | || ||||| | |||||||| | | |||| Sbjct 1616 AGTCGTCCAACGATTCCCAATCAGCGTCGTCCTTTGAAAAGTCTACTTCGGTAACCGTCC 1675 Query 47144 AGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAA 47203 |||| ||| || |||| | ||| | ||| ||| ||||||| || || || | Sbjct 1676 AGAAACTCGCTATAGCCTTTTCAAACAAGGTATATAAATCGKGATATTGAATAGGGAATA 1735 Query 47204 TAACAAATCTATTTGGATTTTTTGCAAGTATAGGTTC 47240 ||| ||| ||||||||||| || |||||||| Sbjct 1736 ATACATATCGATTTGGATTTTCAATTAGGATAGGTTC 1772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712575767261760