Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq8895 134 3e-26 seq12650 93.3 1e-13 seq21550 86.0 1e-11 >seq8895 Length=8815 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || ||||||||||| |||||||||||||||||||| || | || | ||| ||| Sbjct 791 AGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCCAGTGTCCGCCCGTCT 732 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || ||||| || | || || ||||| | | ||||||||| || ||| Sbjct 731 TCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGGATTCCTTCTTTGTCT 672 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||||||| ||||| | || | |||| ||||||||||| || | || || || Sbjct 671 TGAATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTACCTCCAAGGTGATGGTC 612 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || ||||| |||| |||||| Sbjct 611 TTACCAGTAAGCGTTTTCACAAAGATCTGCAT 580 >seq12650 Length=5101 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || ||||| ||||| | ||| ||||| | | |||||||||||| ||||||||||| Sbjct 749 TTTCCAGCGAAAATAAGGCGCTGTTGGTCTGGAGGGATTCCTTCCTTATCTTGAATTTTG 690 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 || || | || | | || ||||| |||||||| ||||| ||||| || ||| Sbjct 689 GCCTTCACGTTGTCGATAGTATCACTGCTCTCGACTTCAAGGGTAATTGTTTTCCCTGTG 630 Query 152082 AGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| ||||| || | |||||| || Sbjct 629 AGAGTTTTCACAAAAATCTGCATATT 604 >seq21550 Length=3044 Score = 86.0 bits (94), Expect = 1e-11 Identities = 99/130 (76%), Gaps = 4/130 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| |||||||||||||| || || | || | |||||| Sbjct 2650 AGCACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCCAGTGTGCGCCCATCC 2591 Query 151953 TCTAGGCT--TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || || ||||||| | ||||| || ||||||||||||| | ||| || || || | Sbjct 2590 TCCAG-CTGCTTTCCCG-CAAAGATCAGTCTCTGCTGGTCCGGGGGGATGCCCTCTTTGT 2533 Query 152011 CTTGAATTTT 152020 | |||||||| Sbjct 2532 CCTGAATTTT 2523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153225874491053