Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq12187 145 2e-29 seq8895 145 2e-29 seq195 129 1e-24 seq19263 120 6e-22 seq21550 114 3e-20 seq37257 107 4e-18 seq13311 102 2e-16 seq26458 96.9 7e-15 seq14997 96.9 7e-15 seq16313 93.3 9e-14 seq7346 93.3 9e-14 seq25089 91.5 3e-13 seq15643 91.5 3e-13 seq9923 91.5 3e-13 seq4698 91.5 3e-13 seq1335 91.5 3e-13 seq17433 84.2 5e-11 >seq12187 Length=9842 Score = 145 bits (160), Expect = 2e-29 Identities = 168/224 (75%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||||||||| || |||| || | |||| || || ||||| |||||||| || Sbjct 9620 CCTCCACGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCC 9679 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| || ||||| || || ||||||||||| ||||| || || ||||| || Sbjct 9680 AGAGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGG 9739 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCT-TCGAC 283051 || |||||||| || || ||||| || || ||| | || |||||||| | |||| || || Sbjct 9740 ATGCCCTCCTTATCCTGAATCTTGGCCTTCACGTTGTCAATAGTGTCTG-AGCTCTCCAC 9798 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCT 283095 || || ||||| ||||| || || | || || ||||| |||| Sbjct 9799 CTCCAGCGTGATGGTCTTCCCGGTGAGGGTTTTTACGAAGATCT 9842 >seq8895 Length=8815 Score = 145 bits (160), Expect = 2e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| || ||||| || || || | || |||||||||||||||||| ||||| Sbjct 807 ACCTCCACGTAGACGAAGCACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGC 748 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || || || || || |||||||| || || || ||||| | |||||||||| || Sbjct 747 CAGTGTCCGCCCGTCTTCCAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGG 688 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || || |||||||| || || || || ||| | || |||||||| ||| || || Sbjct 687 GATTCCTTCTTTGTCTTGAATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTAC 628 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||| |||||||| || | || || || || |||||||| Sbjct 627 CTCCAAGGTGATGGTCTTACCAGTAAGCGTTTTCACAAAGATCTGCAT 580 >seq195 Length=29407 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 || |||||||| || ||||||||| || ||||| ||| | | || | || || || Sbjct 27205 ACGAGATGTAAGGTTGATTCTTTTTGTATATTGTAATCACCCAATGTTCTCCCGTCTTCC 27146 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | |||||| || ||||| ||||| ||||||||||| || || || ||||| || ||| Sbjct 27145 AATTGTTTTCCTGCAAAAATCAATCGTTGTTGGTCGGGTGGCATTCCTTCCTTATCCTGG 27086 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 || || | |||||| |||| || || || |||| ||| || ||||| || || || ||| Sbjct 27085 ATTTTAGACTTTACGTTATCTATCGTATCTGAAGATTCAACGTCGAGTGTTATAGTTTTA 27026 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| || | ||||| ||||| Sbjct 27025 CCTGTTAAAGTTTTGATAAATATTTGCAT 26997 >seq19263 Length=3464 Score = 120 bits (132), Expect = 6e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 282875 ACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAG 282934 ||| ||||| |||||||||| || | ||| || ||||| ||||| ||||||||||| Sbjct 2710 ACCTCGCAGCCGAAGTACCAAGTGCAGCGTTGACTCCTTTTGAATGTTATAGTCAGCAAG 2769 Query 282935 CGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAAT 282994 || || |||||||| |||||||| |||||||||||||| || || ||||| ||||| Sbjct 2770 GGTACGTCCATCCTCAAGTTGTTTACCGGCAAAGATCAATCGCTGCTGGTCTGGGGGAAT 2829 Query 282995 ACCCTCCTTGTCTTGG 283010 |||||||| || ||| Sbjct 2830 CCCCTCCTTATCCTGG 2845 >seq21550 Length=3044 Score = 114 bits (126), Expect = 3e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| ||||| ||||| || ||||| || | ||| || ||||||||||||||||| || Sbjct 2666 ACCCCCACGGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCTGC 2607 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| |||||||| || || || || |||||||||| | || ||||| || Sbjct 2606 CAGTGTGCGCCCATCCTCCAGCTGCTTTCCCGCAAAGATCAGTCTCTGCTGGTCCGGGGG 2547 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||| ||||| || || || || |||| || || ||||| || || Sbjct 2546 GATGCCCTCTTTGTCCTGAATTTTCGCCTTTAACTCCTCAATCGTGTCACTAGGACACAC 2487 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || || | ||||| | ||| | |||||| Sbjct 2486 GTCCAAAGTGATGGTCTTTCCGGTGAGTGTCTTGATGAAAAGCTGCAT 2439 >seq37257 Length=1198 Score = 107 bits (118), Expect = 4e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 316183 TAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATCCTCGATGTGGTGGAAA 316242 || ||||| ||||||||||| ||||| ||| |||| || || | ||| |||||||||||| Sbjct 157 TAGCGCCACTGGATGTACTGGTTGGGGGTCTTGTCGAGGTGTTGCTCAATGTGGTGGAAA 216 Query 316243 GCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAAC 316289 || ||||||||||| || || | ||| || || ||||||||||| || Sbjct 217 GCATGCTGTGCCACATATGCCACACGGATGTTGGGATGCTTCCACAC 263 >seq13311 Length=4779 Score = 102 bits (112), Expect = 2e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || ||||| || || || |||| || | || || || ||||| ||||||||||| Sbjct 4619 CCTCCACGGAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCAGCC 4678 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || || |||||||| | || || |||||| ||| Sbjct 4679 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCAGGGGGA 4738 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGAT 283033 || ||||||||||| || ||||| || || ||| | || || Sbjct 4739 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTGTCAAT 4779 >seq26458 Length=3991 Score = 96.9 bits (106), Expect = 7e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||||||| || ||||| || | |||| || || ||||| ||||||||||| Sbjct 2094 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCAGCG 2035 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTC 282985 |||||||| || ||||| ||||| ||||| || || |||| || || ||||| Sbjct 2034 AGCGTGCGACCGTCCTCCAGTTGCTTCCCCGCGAAAATCAGGCGCTGCTGGTC 1982 >seq14997 Length=6664 Score = 96.9 bits (106), Expect = 7e-15 Identities = 78/93 (84%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 || ||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||||| Sbjct 806 CGCATTAGTATAGTGGTTAGTATCCCTGACTGTCACTCAGGAGACCTGGGTTCGATTCCC 747 Query 168809 CGATTCGTCGCGATAGTG-TATGCAAGTGGTCA 168840 ||| || || ||| | ||||| ||||||| Sbjct 746 AGATGCGGCGGTATATCGCGATGCATGTGGTCA 714 >seq16313 Length=6384 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 168745 ATGACGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAAT 168804 ||| || ||||||||||||||||||||||||| ||||||| ||||||||| |||||| || Sbjct 5796 ATGTCGCATTAGTATAGTGGTTAGTATCCCTGACTGTCACTCAGGAGACCTGGGTTCGAT 5855 Query 168805 TCCCCGATTCGTCG 168818 |||| ||| || || Sbjct 5856 TCCCAGATGCGGCG 5869 >seq7346 Length=7250 Score = 93.3 bits (102), Expect = 9e-14 Identities = 71/82 (87%), Gaps = 3/82 (4%) Strand=Plus/Minus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 || ||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||||| Sbjct 6938 CGCATTAGTATAGTGGTTAGTATCCCTGACTGTCACTCAGGAGACCTGGGTTCGATTCCC 6879 Query 168809 CGATTCGTCGCGATAGTGTATG 168830 ||| || ||||| || |||| Sbjct 6878 AGATGCG--GCGAT-GTCTATG 6860 >seq25089 Length=4535 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 || ||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||||| Sbjct 251 CGCATTAGTATAGTGGTTAGTATCCCTGACTGTCACTCAGGAGACCTGGGTTCGATTCCC 310 Query 168809 CGATTCGTCG 168818 ||| || || Sbjct 311 AGATGCGGCG 320 >seq15643 Length=6535 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 || ||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||||| Sbjct 5647 CGCATTAGTATAGTGGTTAGTATCCCTGACTGTCACTCAGGAGACCTGGGTTCGATTCCC 5706 Query 168809 CGATTCGTCG 168818 ||| || || Sbjct 5707 AGATGCGGCG 5716 >seq9923 Length=12562 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 168746 TGACGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATT 168805 || || ||||||||||||||||||||||||| ||||||| ||||||||| |||||| ||| Sbjct 12035 TGTCGCATTAGTATAGTGGTTAGTATCCCTGACTGTCACTCAGGAGACCTGGGTTCGATT 11976 Query 168806 CCCCGATTCGTCG 168818 ||| ||| || || Sbjct 11975 CCCAGATGCGGCG 11963 >seq4698 Length=15936 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 || ||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||||| Sbjct 626 CGCATTAGTATAGTGGTTAGTATCCCTGACTGTCACTCAGGAGACCTGGGTTCGATTCCC 685 Query 168809 CGATTCGTCG 168818 ||| || || Sbjct 686 AGATGCGGCG 695 >seq1335 Length=25560 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 || ||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||||| Sbjct 839 CGCATTAGTATAGTGGTTAGTATCCCTGACTGTCACTCAGGAGACCTGGGTTCGATTCCC 780 Query 168809 CGATTCGTCG 168818 ||| || || Sbjct 779 AGATGCGGCG 770 >seq17433 Length=6093 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| ||||| |||| || | ||| || || ||||||||||| |||||| Sbjct 2945 CCACCACGCAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 2886 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCA 282986 || |||||||| ||||| || || || || || || |||| || || || ||| Sbjct 2885 AGAGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGATCA 2832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046199487202922