Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq12187 150 1e-31 seq21550 111 1e-19 seq17433 86.0 5e-12 seq8895 82.4 5e-11 >seq12187 Length=9842 Score = 150 bits (166), Expect = 1e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || | ||| | || ||||| ||| |||||| |||||| ||||| ||||| || || Sbjct 9620 CCTCCACGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGCC 9679 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || |||| |||| |||||||||||||||||||| ||||| |||||||| || | ||| Sbjct 9680 AGAGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGGG 9739 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | || ||||| ||| ||||| ||||| | | || ||||| | | |||||| Sbjct 9740 ATGCCCTCCTTATCCTGAATCTTGGCCTTCACGTTGTCAATAGTGTCTGAGCTCTCCACC 9799 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGAT 44331 |||| ||| || ||||| || |||||||| || |||||||| Sbjct 9800 TCCAGCGTGATGGTCTTCCCGGTGAGGGTTTTTACGAAGAT 9840 >seq21550 Length=3044 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 ||||| | || | || ||||||||| || ||| |||||||||||||||||| || || Sbjct 2665 CCCCCACGGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCC 2606 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 ||| |||| | || ||||||||||| || |||||||||| | |||||| || | || Sbjct 2605 AGTGTGCGCCCATCCTCCAGCTGCTTTCCCGCAAAGATCAGTCTCTGCTGGTCCGGGGGG 2546 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCT--ATGGTGTCGGCGGATTCCA 44288 | || || || ||| || ||| ||| || |||| || ||||| | || Sbjct 2545 ATGCCCTCTTTGTCCTGAATTTTCGCCTTTAA--CTCCTCAATCGTGTCACTAGGACACA 2488 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||| || || |||||||| ||||| ||||| | ||| | ||||| Sbjct 2487 CGTCCAAAGTGATGGTCTTTCCGGTGAGTGTCTTGATGAAAAGCTGCAT 2439 >seq17433 Length=6093 Score = 86.0 bits (94), Expect = 5e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| |||||| ||| |||||| |||||||||||||| || || ||| |||| || Sbjct 2928 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTGCGGCCGTCCTC 2869 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 |||||||| || || || |||| ||||||||||| | ||| Sbjct 2868 AAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGATCAGGAGG 2827 >seq8895 Length=8815 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| |||||||| || || ||||||||||||||||| || ||| ||| |||| || Sbjct 789 CACGAGGTGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGCCAGTGTCCGCCCGTCTTC 730 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||| || || || || || ||||| | || || || | || | ||||| || || Sbjct 729 CAGTTGTTTGCCCGCGAATATCAATCTTTGTTGGTCAGGTGGGATTCCTTCTTTGTCTTG 670 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || || ||| | | | || ||||| | || ||||||| || || ||||| Sbjct 669 AATTTTGGCCTTGACGTTGTCAATAGTGTCAGAACTCTCTACCTCCAAGGTGATGGTCTT 610 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGATGT 44342 || || || || ||||| ||||| |||||| ||| Sbjct 609 ACCAGTAAGCGTTTTCACAAAGATCTGCATGGTGT 575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359813838545931