Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq8895 156 1e-32 seq12187 140 8e-28 seq195 122 2e-22 seq12650 120 7e-22 seq21550 111 4e-19 seq37070 96.9 8e-15 seq13311 91.5 4e-13 >seq8895 Length=8815 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| || || || || || |||||| | ||||| || || || ||| Sbjct 583 CAGATCTTTGTGAAAACGCTTACTGGTAAGACCATCACCTTGGAGGTAGAGAGTTCTGAC 642 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || |||||||| || ||||| ||||||||||||||||| || ||||| ||| Sbjct 643 ACTATTGACAACGTCAAGGCCAAAATTCAAGACAAAGAAGGAATCCCACCTGACCAACAA 702 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || ||||| || ||||| || |||| || || ||||| ||| || Sbjct 703 AGATTGATATTCGCGGGCAAACAACTGGAAGACGGGCGGACACTGGCTGATTACAACATC 762 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| || || || || || Sbjct 763 CAAAAAGAATCTACTCTTCACCTCGT 788 >seq12187 Length=9842 Score = 140 bits (154), Expect = 8e-28 Identities = 153/202 (76%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 177927 ATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACC 177986 || ||||| ||||| ||||| || || || ||||| || |||||||| ||||||||||| Sbjct 9840 ATCTTCGTAAAAACCCTCACCGGGAAGACCATCACGCTGGAGGTGGAGAGCTCAGACACT 9781 Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || || ||||| || ||||||||||| || || || |||||||| |||||||| || Sbjct 9780 ATTGACAACGTGAAGGCCAAGATTCAGGATAAGGAGGGCATCCCTCCCGACCAGCAGCGG 9721 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 | || || ||||| || ||||| || || || | ||||| || || || || |||| Sbjct 9720 TTGATTTTTGCCGGGAAGCAGCTGGAGGACGGGCGCACTCTGGCGGACTACAATATCCAG 9661 Query 178107 AAAGAATCAACACTGCATCTTG 178128 || || || || ||||| |||| Sbjct 9660 AAGGAGTCCACGCTGCA-CTTG 9640 >seq195 Length=29407 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || | |||||| | ||||| ||||| || || ||||| || ||| ||||| Sbjct 27000 CAAATATTTATCAAAACTTTAACAGGTAAAACTATAACACTCGACGTTGAATCTTCAGAT 27059 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || || || ||||| || |||||||| || || ||||| ||| Sbjct 27060 ACGATAGATAACGTAAAGTCTAAAATCCAGGATAAGGAAGGAATGCCACCCGACCAACAA 27119 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || || || |||||||| | ||||| || || || | | ||||| || | Sbjct 27120 CGATTGATTTTTGCAGGAAAACAATTGGAAGACGGGAGAACATTGGGTGATTACAATATA 27179 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 |||||||||||||| | ||||| || ||| Sbjct 27180 CAAAAAGAATCAACCTTACATCTCGTGTTG 27209 >seq12650 Length=5101 Score = 120 bits (132), Expect = 7e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| ||||||||||||||||| ||||| || ||||| || || || ||| || Sbjct 610 CAGATTTTTGTGAAAACTCTCACAGGGAAAACAATTACCCTTGAAGTCGAGAGCAGTGAT 669 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || || ||||| || || |||||||||||||| ||||| || Sbjct 670 ACTATCGACAACGTGAAGGCCAAAATTCAAGATAAGGAAGGAATCCCTCCAGACCAACAG 729 Query 178044 CGACTTATCTTCGCCGGAAAACAG 178067 || ||||| ||||| ||||| ||| Sbjct 730 CGCCTTATTTTCGCTGGAAAGCAG 753 >seq21550 Length=3044 Score = 111 bits (122), Expect = 4e-19 Identities = 149/204 (73%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 177928 TTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCA 177987 ||||| | || || ||||| ||||| || ||||| | || ||| ||||| | Sbjct 2446 TTTTCATCAAGACACTCACCGGAAAGACCATCACTTTGGACGTGTGTCCTAGTGACACGA 2505 Query 177988 TCGAGAACGTCAAA--CAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 | ||| | || ||| | ||| |||||||||||||| || ||||| ||||||||||| | Sbjct 2506 TTGAGGA-GTTAAAGGCGAAA-ATTCAGGACAAAGAGGGCATCCCCCCGGACCAGCAGAG 2563 Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105 ||| ||||| || ||||| ||||| || ||||| | || || || || || ||| |||| Sbjct 2564 ACTGATCTTTGCGGGAAAGCAGCTGGAGGATGGGCGCACACTGGCAGACTACAACATCCA 2623 Query 178106 AAAAGAATCAACACTGCATCTTGT 178129 ||| || || || ||||| || || Sbjct 2624 AAAGGAGTCCACCCTGCACCTGGT 2647 >seq37070 Length=1165 Score = 96.9 bits (106), Expect = 8e-15 Identities = 148/210 (70%), Gaps = 12/210 (6%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| || || ||| | |||||| |||||||||||||||| ||| Sbjct 459 CAAATCTTTGTAAAAACTCTTACCGGGAAACCCATCACCTTCGAGGTGGAAAGCTCTGAC 518 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAG---GAATCCCTCCGGACCAG 178040 || || || || | || | || |||||| || || | | |||||||| ||||| Sbjct 519 ACAATAGACAAGCTGAAGGCCACGAATCAGGAGAAGGAGGCTCGTATCCCTCCCAACCAG 578 Query 178041 CAACGACTTATCTTCGC---CGGAAAACAGCT------CGAAGATGGAAGGACTCTTGCC 178091 || || ||||| ||||| | | || ||||| || | ||| | || ||||| Sbjct 579 CAGCGCCTTATTTTCGCGGGCCGGAAGCAGCTGGAGTAGGACGCGGGACGCACGCTTGCT 638 Query 178092 GATTATAACGTCCAAAAAGAATCAACACTG 178121 | | |||| ||| ||| |||| |||||| Sbjct 639 AACTGTAACATCCGAAAGGAATTCACACTG 668 >seq13311 Length=4779 Score = 91.5 bits (100), Expect = 4e-13 Identities = 106/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 177987 ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGA 178046 || || ||||| || |||||||||||||| || ||||| || || |||||||| || Sbjct 4779 ATTGACAACGTGAAGGCCAAGATTCAGGACAAGGAGGGAATTCCCCCTGACCAGCAGCGC 4720 Query 178047 CTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAA 178106 |||||||| || || || |||||||| || || | || || || || || || |||| Sbjct 4719 CTTATCTTTGCGGGCAAGCAGCTCGAGGACGGCCGCACCCTGGCTGACTACAATATCCAG 4660 Query 178107 AAAGAATCAACACTGCATCTTG 178128 || || || || ||||| |||| Sbjct 4659 AAGGAGTCTACCCTGCA-CTTG 4639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203110540018142