Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cymbomonas_20tetramitiformis_20[genbank_20GCA_5F001247695.1_202015- 08-05] 40,243 sequences; 281,270,454 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq12187 125 7e-24 seq13311 109 5e-19 seq26458 102 8e-17 seq18016 95.1 1e-14 seq17433 89.7 5e-13 >seq12187 Length=9842 Score = 125 bits (138), Expect = 7e-24 Identities = 167/228 (73%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||| ||||||||| ||||||||| || || ||||| | Sbjct 9619 GCCTCCACGCAGGCGCAGCACCAAGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCCGC 9678 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || |||||| |||| || |||||||| ||||| || |||| ||||| ||||| | || Sbjct 9679 CAGAGTGCGCCCGTCCTCCAGCTGCTTCCCGGCAAAAATCAACCGCTGCTGGTCGGGAGG 9738 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTC---GCTCGACT 41810 | || |||||| ||| ||| | || || | ||| | || |||||| |||| | Sbjct 9739 GATGCCCTCCTTATCC-TGAATCTTGGCCTTCACGTTGTCAATAGTGTCTGAGCTC---T 9794 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCT 41858 ||||||||| ||| || || || || || || || |||||||| |||| Sbjct 9795 CCACCTCCAGCGTGATGGTCTTCCCGGTGAGGGTTTTTACGAAGATCT 9842 >seq13311 Length=4779 Score = 109 bits (120), Expect = 5e-19 Identities = 117/152 (77%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||||| || ||||||||| || || ||||| | Sbjct 4619 CCTCCACGGAGACGGAGCACCAAGTGCAGGGTAGACTCCTTCTGGATATTGTAGTCAGCC 4678 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| |||||||||||||| || || || |||||||| ||||| | |||| Sbjct 4679 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCCGCAAAGATAAGGCGCTGCTGGTCAGGGGGA 4738 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA 41786 | | |||||||||| ||| | || | ||||| Sbjct 4739 ATTCCCTCCTTGTCC-TGAATCTTGGCCTTCA 4769 >seq26458 Length=3991 Score = 102 bits (112), Expect = 8e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| || || | |||||| ||||||||| ||||||||| || || ||||| | Sbjct 2095 GCCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATATTGTAGTCAGC 2036 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 ||| ||||| |||| || || ||||| || ||||| ||||||||||| ||||| Sbjct 2035 GAGCGTGCGACCGTCCTCCAGTTGCTTCCCCGCGAAAATCAGGCGCTGCTGGTC 1982 >seq18016 Length=3756 Score = 95.1 bits (104), Expect = 1e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||||| ||| |||||| || || || ||||| | | Sbjct 91 CCTCCKCGGAGACGGAGCACCAAGTGCAGGGTGGACTCCTTTTGGATATTGTAGTCAGCG 150 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||| ||||| || || ||||| ||||| | ||| Sbjct 151 AGAGTGCGACCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGACGCTGCTGGTCAGGTGGA 210 Query 41756 A 41756 | Sbjct 211 A 211 >seq17433 Length=6093 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 |||||| || || ||||| | ||||| || || ||| ||||||||| ||||| || || Sbjct 2949 ACCGCCACCACGCAGACGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATC 2890 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 | || ||||| |||| || |||||||| || ||||| ||||||||||| || || Sbjct 2889 AGCAAGAGTGCGGCCGTCCTCAAGCTGCTTACCAGCGAAAATCAGGCGCTGCTGATC 2833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462071443751600