Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1788 401 1e-106 seq630 114 3e-20 seq3990 109 1e-18 seq6575 100 6e-16 seq234 98.7 2e-15 seq5532 87.8 4e-12 seq2051 87.8 4e-12 >seq1788 Length=9675 Score = 401 bits (444), Expect = 1e-106 Identities = 765/1122 (68%), Gaps = 10/1122 (1%) Strand=Plus/Plus Query 318841 TTCCACTGAACCTCGTACTCGTAAGATTTTTTCAGCTTGCGGCGACCAAGAATCTTGTCA 318900 |||||||| |||||||||||||| ||| |||||||||| || || | ||| || Sbjct 8 TTCCACTGCACCTCGTACTCGTAGCCGCGCTTCTGCTTGCGGCGGCCCAGCAGCTTCTCC 67 Query 318901 AGAATTTTCTTCACTCCGTCAACGACTTTAGTGTCATACATCTTCTTTAGTTCTTCTTCG 318960 | | |||||| ||||| || || || || | ||||||||| || || || Sbjct 68 ACCACGCGCTTCACGCCGTCCACCACCTTGACCTCGTTCATCTTCTTCTCCTCCTCCTCC 127 Query 318961 TTGTTCTTCCTAGAAACGACGTCAAGGGTCTCTTTGTCTTCACCGGAGGCATAACGCCAT 319020 ||| ||| | || || ||| |||| ||| ||| || |||| ||| |||||||| Sbjct 128 TTGAGCTTGCGCGACACCTTGTCCAGGGACTCGCGGTCCTCGCCGGTGGCGTAACGCCAC 187 Query 319021 TGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAGCATGCTGT 319080 ||||| ||||||||||| |||||||| || || | ||| ||||||||||| || ||||| Sbjct 188 TGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATGTGGTGGAAGGCGTGCTGA 247 Query 319081 GCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTACCGATGGTGGCTTCCATT 319140 |||||||| || | |||| || || |||||||| || || ||| |||| Sbjct 248 GCCACGTAGGCCACGCGCAGGTTGGGGTGCTTCCACACCAGGCCAGACTCGGCCTCCAGC 307 Query 319141 TGTCCCGTGAGCACCTTAATGAGGGTGCTTTTCCCCGCACCGTTTTCGCCCACCACACCG 319200 | || || |||| ||| ||||||||| || || |||||||| ||||| ||| | Sbjct 308 TCGCCGGTCAGCAGCTTGATGAGGGTGGACTTGCCGGCACCGTTGGGGCCCAGCACGGCC 367 Query 319201 ATCCTGGAGTTCAGCGATACCTGGGCATTCACGTTGTCAAAGATTAGTTTTTCCGTACCC 319260 | | ||||| ||||| ||||| || || | || | ||| | | || | Sbjct 368 ACGCGCGAGTTGAGCGACACCTGCAGGTTGACCTCGTTCAGGATGCGGGTCTCGGCGGTG 427 Query 319261 GGATACTTGAACCCCACACCGCGTAGCTTCATGATGGCACGGTCCTTCGAAGTGATACCC 319320 || |||||||| || ||||| | ||| | |||||| |||||||| || |||| ||| Sbjct 428 GGGTACTTGAAGTTGACGCCGCGCATCTTGAGGATGGCGCGGTCCTTGGAGGTGACGCCC 487 Query 319321 TCGAGGAACCCGGGCTCGGGGAACTTCCACGTGGTCTTCGTCTCGGTAAGGGCGTAGTAA 319380 |||||||| ||||||||||| | | |||| |||| | | |||| ||| |||||| Sbjct 488 TCGAGGAAGCCGGGCTCGGGCAGCACCCACTTGGTGGTGGCGTCGGCCAGGTTGTAGTAG 547 Query 319381 CTCGCTGATTCGGGACGCTTCTTCACGAACTCGGACAGATTTCCCTTGTACTTCTTCAGC 319440 || | ||||| |||| || ||| |||| |||||| || ||| ||||||||||||| Sbjct 548 GCAGCGGCCTCGGGGCGCTGCTCCACAAACTTGGACAGGTTGCCCAGGTACTTCTTCAGC 607 Query 319441 TTTAGGTTAGGTTCGTAATGGATAATAGAGGTGCAAACAGCGTCGAGGAACCCGGAGTCG 319500 || | ||| ||||| ||||| || |||||| || ||||| ||||| || |||||| Sbjct 608 TTGAAGTTGTCCTCGTAGTGGATGATGCTGGTGCACACGGCGTCCAGGAAGCCAGAGTCG 667 Query 319501 TGTGACACAATCACGCACGAAACGTCCTTAAGGTTGATCAGGTATTCAATCAACCACCTC 319560 || ||||| | ||||| | || |||| ||| || |||||| || |||| |||| | Sbjct 668 TGCGACACCACCACGCTGGTCACCCCCTTGAGGCCGACCAGGTAGTCGATCAGCCACTTG 727 Query 319561 ACGTTAGACACAGAAAGATGGTTGGTCGGCTCGTCAAGAAGCAGTAGCTTTGCGTTCAGG 319620 ||||| | ||| || |||||||| ||||| || || |||| | | ||||||| Sbjct 728 ACGTTGGTCACGTCCAGGTGGTTGGTGGGCTCATCCAGCAGCATGATGTCGGCGTTCATC 787 Query 319621 AGCATTGCACGTGCAAGAGCGAGTTTCATTTTCCACCCTCCGGAAAGAGTGTTAATTGGG 319680 ||||| || || || || || || ||||| ||||| || || || || | | | || Sbjct 788 AGCATGGCGCGCGCCAGGGCCAGCTTCATCTTCCAGCCACCAGACAGGGAGGCCA--CGG 845 Query 319681 GCA--GATTGGCGCTCAATATCAAAGCCAACCGATTCTAG--AGTAG-TTACGATCTTTT 319735 ||| | |||||||| | ||||| || || || || | | | ||| | | Sbjct 846 GCAGCGCCTGGCGCTCGGCGTTGAAGCCCACAGACTCCAGCACCTCGATGACGCGC---T 902 Query 319736 CACGAGACCAAATGTTTTCCTTTACTTGTTCATCATTGGCAATGAAGTCAATGATAGCCG 319795 | || || | ||||| || || || || | | ||| || | | | | Sbjct 903 CGCGGGAGGGCAGCACCTCCTTCACCATCTCGTCGTTCACCACGAACTCCACCACCGGGG 962 Query 319796 TGTTAGAATCGGACCCGTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAG 319855 | | | ||||| |||||| ||||| || ||||| | || || || | | Sbjct 963 TCTCGGCCTCGGAGGCGTCGATGTCGTGCTCGACGTACACGGTGCGCAGCTCAGACTTGG 1022 Query 319856 AGGGGAACCCTTCAAGCTGGCCGTTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCC 319915 ||||| || || ||||||||||| | || |||||||| ||||| || || || || | Sbjct 1023 GCGGGAAGCCGTCCAGCTGGCCGTTGGCGATGGCGCGCATGAGGGTGGACTTGCCGGCGC 1082 Query 319916 CGTTTGGCCCACACAGACCGTAGCGGTTTCCGCGTTTCAGGT 319957 |||| || || ||||| |||||||| | ||||| ||||||| Sbjct 1083 CGTTGGGGCCGCACAGGCCGTAGCGCTGGCCGCGCTTCAGGT 1124 Score = 174 bits (192), Expect = 3e-38 Identities = 198/266 (74%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 320296 GCGACCTTCCGAGCTTCGGGGTTAGACATACCTTCGGCAGCGGACTTAACCTTATCAACC 320355 || |||| || || |||||||| ||||| || || ||| |||| || || | | Sbjct 1649 GCCACCTCGCGGGCCTCGGGGTTGGACATGCCCTCCATCGCGTACTTGACGTTGGGCAGC 1708 Query 320356 AGGAGGTAGGCGAATTTAGCGGCGTCGGAAGGGTCGTCCACCAGTTTCGCCATGTTCCTG 320415 ||| | | || || |||||||| |||||||||||||| || |||||||| | | Sbjct 1709 AGGGTGGCCACAAAGTTGGCGGCGTCCACCGGGTCGTCCACCAGCTTGGCCATGTTGCGG 1768 Query 320416 ATGATAACACATGTCTTACGCCGAACGGGGGTGGTGCGATCGGCAAGCCCGCGGACGAGT 320475 ||||| || || | ||| || || | |||||||||||| |||| || ||||||||||| Sbjct 1769 ATGATGACGCAGGCCTTGCGGCGGATGGGGGTGGTGCGGTCGGTCAGGCCGCGGACGAGC 1828 Query 320476 AGCGGGGTCAGGATAGACAGGGTCTTCGCGTCAACCGACTGGACGAACGTGGTCGCAGAT 320535 || || |||||| |||||||| |||||| || ||||| |||||||||||||| || Sbjct 1829 AGGGGCACCAGGATGGACAGGGTGCGCGCGTCCACAGACTGCACGAACGTGGTCGCCGAC 1888 Query 320536 AGGTTGTGGACACACTCGGGGACGTC 320561 || |||||||| || ||||| || || Sbjct 1889 AGCTTGTGGACGCAGTCGGGCACCTC 1914 >seq630 Length=20033 Score = 114 bits (126), Expect = 3e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 318996 GTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATC 319055 ||| |||||| ||| |||||||| ||||| ||||||||||| |||||||| || || Sbjct 10549 GTCCTCACCGCTGGCGTAACGCCACTGGATGTACTGGTTGGGAGTCATGTCCAGGTGGCT 10608 Query 319056 CTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCA 319115 ||| ||||||||||| || ||||| |||||||| || | ||||| || || |||||||| Sbjct 10609 CTCAATGTGGTGGAAGGCGTGCTGCGCCACGTAGGCCACACGCAGGTTGGGGTGCTTCCA 10668 Query 319116 AAC 319118 || Sbjct 10669 CAC 10671 Score = 102 bits (112), Expect = 2e-16 Identities = 225/333 (68%), Gaps = 11/333 (3%) Strand=Plus/Plus Query 320401 TTCGCCATGTTCCTGATGATAACACATGTCTTACGCCGAACGGGGGTGGTGCGATCGGCA 320460 || |||||||| | |||||| || |||| |||||| || | |||||||||||| || | Sbjct 13634 TTGGCCATGTTGCGGATGATGACGCATGCCTTACGGCGGATGGGGGTGGTGCGGTCTGTG 13693 Query 320461 AGCCCGCGGACGAGTAGCGGGGTCAGGATAGACAGGGTCTTCGCGTCAACCGACTGGACG 320520 || ||||| || || || || |||||| |||||||| || || || ||| || Sbjct 13694 AGGCCGCGCACCAGCAGGGGCACCAGGATGGACAGGGTGCGTGCATCCACGCTCTGAACA 13753 Query 320521 AACGTGGTCGCAGATAGGTTGTGGACACACTCGGGGACGTC-CTGAGGAGAACCAATACT 320579 || ||||| || || ||||| || || ||||| || || ||| || | || || | Sbjct 13754 AAGGTGGTGGCGCTCAGCTTGTGCACGCAGTCGGGCACCTCGCTG-GGGGCGCCGATGCA 13812 Query 320580 CTTCACGAGATGGGGAATGAAGGGTTCGATGTCTTTGTTATCAAT---TTGACAACACGC 320636 | || ||||| | ||||| || ||||| ||| |||| ||| ||| Sbjct 13813 GCGGATCAGGTGGGGCACAAAGGGCTCAATGTCGCGGTTGCCAATGGCGGCACAGCACTT 13872 Query 320637 GATAAGAGCCT---TCGTGGCACTGTCCTTTACCACTTGCTTCAGGTCAATCATACAATC 320693 | | || || | ||| |||| | | || |||| ||||| | ||| || | Sbjct 13873 GGTGAGTGCGTTGGTCGCGGCAGAGCGC---ACGGTGGGCTTGAGGTCCACCATGCAGTT 13929 Query 320694 TGTCACCACCGGTACAATTTCGGGAAGGTAGAC 320726 |||||||| || |||||||||||||||||||| Sbjct 13930 GGTCACCACGGGCACAATTTCGGGAAGGTAGAC 13962 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 319144 CCCGTGAGCACCTTAATGAGGGTGCTTTTCCCCGCACCGTTTTCGCCCACCACACCGATC 319203 || ||||||| ||| ||||||||| || || |||||||| ||||| ||| | | Sbjct 10851 CCGGTGAGCAGCTTGATGAGGGTGGACTTGCCGGCACCGTTGGGGCCCAGCACGGCCACG 10910 Query 319204 CTGGAGTTCAGCGATACCTGGGCATTCACGTTGTCAAAGATTAGTTTTTCCGTACCCGGA 319263 | |||||| ||||| ||||| ||| |||| || | ||| | | || | | || Sbjct 10911 CGGGAGTTGAGCGACACCTGCAGATTGACGTCGTTCAGGATGCGGGTCTCGGCAGTGGGG 10970 Query 319264 TACTTGAACCCCACACCGCGTAGCTTCATGATGGCACGGTCCTT 319307 |||||||| ||| ||||| | ||||| ||||||||||||||| Sbjct 10971 TACTTGAAGTTCACGCCGCGCATCTTCAGGATGGCACGGTCCTT 11014 >seq3990 Length=3871 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 319885 ATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGTTT 319944 || ||||||||||| || || || ||||| ||||||| || ||||| |||||||| | Sbjct 2771 ATGGCGCGCATCAGCGTGGACTTGCCCGCGCCGTTTGCACCGCACAGCCCGTAGCGACGT 2830 Query 319945 CCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCACCATATGCCAGAGAA 320004 |||||||| || ||| |||| |||||| || |||||| || |||||| |||| || Sbjct 2831 CCGCGTTTGAGCCTGAGGCGCGCGTTGTTTAGCAGAATTCGCCCGCCATATCCCAGTGAG 2890 Query 320005 AATTCACAATCACACAGATCCTC 320027 || ||||| | ||| || ||||| Sbjct 2891 AACTCACAGTTACAGAGCTCCTC 2913 >seq6575 Length=1550 Score = 100 bits (110), Expect = 6e-16 Identities = 231/344 (67%), Gaps = 7/344 (2%) Strand=Plus/Plus Query 318525 GGCCATTGCTCCGAGACTCTCGCGGTCAACGAAGTTGGTCGGTTCGTCCAAAACGATCAC 318584 |||||| || || || ||||||||| | | ||||||| || ||||||| || | | Sbjct 982 GGCCATGGCGCCCAGGGACTCGCGGTCCAGGTAGTTGGTGGGCTCGTCCAGCACCAGGAT 1041 Query 318585 GTGGGGTTGTTGCCATAGAGCAGCGCCAATAACCAATTTCAGCTTTTGCCCGCCAGATAG 318644 |||||| || ||||| | || || || | |||| |||| ||| || || ||||| || Sbjct 1042 GTGGGGCTGCTGCCACATGGCGGCACCCAGCACCAGCTTCACCTTCTGGCCACCAGACAG 1101 Query 318645 ACCACGAATGCGAGAATGAGTTGTAAATTCAGGGTCGAGCCCAACATTTGCCATATGTTC 318704 || || || | || || || | || || | | || || | || ||| || Sbjct 1102 GCCGCGGATCTGGGAGTGGGTGGCGAACTCGGCGGGCAGGCCCAGGTTGCCCAGCATCTC 1161 Query 318705 TTCCACGTTCTTTGCGGTCAGTGGCTTG---AACATACCATTTGCAACGGCTTCTTTGGT 318761 ||||||||||| |||||||| |||||| | || || || | || || || | Sbjct 1162 CTCCACGTTCTTGGCGGTCAGGGGCTTGCCCAGCAGGCCGGCGGCGGCCGCCTCCTTCAT 1221 Query 318762 ATCAATATCGTTCAGAAGTTTTCCGAAA--CCATACTCCTCCAGGCGTTCGCGGGACATC 318819 || || ||| | || | | ||| | || |||| |||||| || || ||||||| || | Sbjct 1222 GTCGATGTCGGTGAGCA-TCTTCTGGAAGCCCAT-CTCCTCGAGCCGGTCGCGGGTCAGC 1279 Query 318820 CATTGGGTAGTCTCATCGTTTTTCCACTGAACCTCGTACTCGTA 318863 || || | | ||| |||||||| |||||||||||||| Sbjct 1280 CAGGAGGCCTCCCCCTCGCCCTTCCACTGCACCTCGTACTCGTA 1323 >seq234 Length=32518 Score = 98.7 bits (108), Expect = 2e-15 Identities = 193/283 (68%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 292115 TCCTTGCGAGTCTCATTTGATTCTACAATTGCTCCGATGATATCTTGAGGCACTCCCTCG 292174 |||||||| ||| ||| || || || || || || | || |||||||| || || Sbjct 19683 TCCTTGCGCGTCGTATTGGACTCGACGATGGCATGAATCAAATTCTGAGGCACATCC-CG 19741 Query 292175 A-AATTAGCCAGCAGTTGCTTCGTATCCTTTGGAAAGCAATAAGCTCCATAACCGAACGA 292233 | ||||||| |||| ||||| ||||| || || | || || | || || || || || Sbjct 19742 ATAATTAGCGAGCAACTGCTTGGTATCTTTCGGCAGACAGTAGCCGCCGTAGCCAAATGA 19801 Query 292234 AGGGTTTGAGTACCCCTGACCAATGCGAGGCTCCAGAGTCACACCATCAATGATTTCTTT 292293 || || ||| | |||||| ||||| ||||| || || || ||||| | Sbjct 19802 TGGATTATTGTAGTGCGCACCAATACGAGGATCCAGGCCGACCCCTTCGATGATCTGACG 19861 Query 292294 CGCATTCATACCGTGAGACATTGCGAATGTATCTAGTTCGTTGAAGTATGCAACTCGCAT 292353 || || || |||||| | |||| | || || ||||||||||| || || || ||||| Sbjct 19862 CGAATCCAAACCGTGGGTGGCTGCGTACGTGTCAAGTTCGTTGAAATACGCTACACGCAT 19921 Query 292354 TGCAAGATACGTGTTAGAGAATAGTTTGACGGCCTCGGCTTCG 292396 || | ||| || || || || || || || || ||||| ||| Sbjct 19922 CGCCAAATAAGTATTTGAAAACAGCTTTACTGCTTCGGCCTCG 19964 >seq5532 Length=2223 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 190 TGCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 249 Query 165769 CCCCAC 165774 |||||| Sbjct 250 CCCCAC 255 >seq2051 Length=8527 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||||| || || |||| || ||||||||||||||||| Sbjct 8319 TGCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8260 Query 165769 CCCCAC 165774 |||||| Sbjct 8259 CCCCAC 8254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057715586593370