Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq7728 154 1e-32 seq1176 111 1e-19 seq585 100 2e-16 seq1162 98.7 8e-16 seq12 98.7 8e-16 seq1233 89.7 4e-13 seq3338 82.4 6e-11 >seq7728 Length=1087 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| |||||||| | || |||| ||||| ||||||||||| |||||||| ||||||| Sbjct 275 TCCGCCTCGCAGGCGCAGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCCGA 216 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 || || || ||||||||||||| ||||||||| | || || | |||||| || ||| Sbjct 215 AAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCAGGGGG 156 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||||||||||| ||||||||| ||||| | ||| || || | |||||| Sbjct 155 GATCCCTTCCTTGTCCTGGATCTTTTGCTTCACATTCTCGATTGTGTCGCTGGGCTCAAC 96 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || ||||| || || ||||| Sbjct 95 ATCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 48 >seq1176 Length=13603 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| || | ||||||||||| || ||||| ||||| ||| Sbjct 13254 CCGCCGCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 13313 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||||||||| ||||||||| |||| || | ||||||||| ||| Sbjct 13314 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGGG 13373 Query 21069 ACGCCTTCCTTGTC 21082 | ||| |||||||| Sbjct 13374 ATGCCCTCCTTGTC 13387 Score = 109 bits (120), Expect = 5e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 20945 GTTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTC 21004 ||| || || ||||| | ||||||| || | ||||||||||| || ||||| ||||| Sbjct 12491 GTTGCCGCCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 12550 Query 21005 CGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCAC 21064 |||||||| || | ||||||||||| ||||||||| |||| || | ||||||||| Sbjct 12551 AGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGG 12610 Query 21065 GGGCACGCCTTCCTTGTC 21082 || | ||| |||||||| Sbjct 12611 AGGAATGCCCTCCTTGTC 12628 >seq585 Length=20866 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| || | ||||||||||| || ||||| ||||| ||| Sbjct 671 CCACCGCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 730 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 ||||| || | ||||||||||| ||||||||| |||| || | ||||||||| Sbjct 731 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTC 783 >seq1162 Length=13745 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| || | |||||||||||||| ||||| ||||| ||| Sbjct 13606 CCGCCACGCAGGCGAAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCC 13665 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||| ||||| ||||||||| | || || | ||||||||| || Sbjct 13666 AGGGTGCGCCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCGGGAGGA 13725 Query 21069 ACGCCTTCCTTGTC 21082 | ||| |||||||| Sbjct 13726 ATGCCCTCCTTGTC 13739 >seq12 Length=84225 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| || | |||||||||||||| ||||| ||||| ||| Sbjct 46 CCGCCACGCAGGCGAAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCC 105 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||| ||||| ||||||||| | || || | ||||||||| || Sbjct 106 AGGGTGCGCCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCGGGAGGA 165 Query 21069 ACGCCTTCCTTGTC 21082 | ||| |||||||| Sbjct 166 ATGCCCTCCTTGTC 179 >seq1233 Length=13172 Score = 89.7 bits (98), Expect = 4e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| |||| |||||||| || || ||||| || || || Sbjct 13061 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAATCGGCA 13120 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGT 21060 ||||| || ||||||||||||| ||||||||| | || || | |||||||| Sbjct 13121 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGT 13172 >seq3338 Length=4919 Score = 82.4 bits (90), Expect = 6e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||| | ||||||| |||| ||||||||||| || ||||| || || | Sbjct 4814 TTCCGCCCCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGG 4873 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAG 21049 ||||||| || | ||||| ||||| ||||||||| | || || Sbjct 4874 CCAGGGTGCGGCCATCCTCAAGCTGCTTGCCCGCAAAGATGAG 4916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422218034874284