Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq7728 145 8e-30 seq907 123 3e-23 seq1176 122 9e-23 seq1162 109 6e-19 seq73 109 6e-19 seq1233 105 7e-18 seq12 104 2e-17 seq3338 98.7 1e-15 seq585 93.3 4e-14 >seq7728 Length=1087 Score = 145 bits (160), Expect = 8e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| ||||||||| | || || || ||| | Sbjct 48 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTAGATGTTGAGCCCAGC 107 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| |||| || | ||||| || || |||||| | || ||| Sbjct 108 GACACAATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAAGGGATCCCCCCTGATCAG 167 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || ||||||| |||||||| |||||||| |||| ||||| || ||||||||| Sbjct 168 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTTTCGGACTACAAC 227 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 || ||||||||| |||| |||| || || ||||| || | ||||| || Sbjct 228 ATTCAGAAGGAGTCCACATTGCACCTGGTTCTGCGCCTGCGAGGCGGAGG 277 >seq907 Length=16333 Score = 123 bits (136), Expect = 3e-23 Identities = 127/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 ||||| ||| | || || ||| || |||||| ||||||| || || ||| | || Sbjct 11206 GAGCGTCTGATTGCGTTTGCGTGTGTGGAGGGCATCTTCTTCTCCGGGTCCTTCTGCTCC 11265 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || || ||||||||||| ||||| |||||||||||||| |||||| |||||||||||| Sbjct 11266 ATCTTCTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCACTTTCTCAAACGAGCTCATC 11325 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 |||||||||| ||||| ||||||||||| |||||| || Sbjct 11326 AGTCGGGACGAGGGCCTGCACACAGACTTTGCCTGCCTGCTGTACA 11371 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 116681 GAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGC 116740 || ||||| ||||| || ||| | | ||||||||||| | |||||| |||| ||| Sbjct 10441 GAAGAGGTTGACCTTGGCAGTGACGCCAAGGACTGGGAGCGGCTCAACGACGACGAACGC 10500 Query 116741 CATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAAT 116800 || || | ||||||||||||||| || || || || || ||||||||||| || Sbjct 10501 CACTTTGTGTCGCACGTGCTGGCCTTCTTTGCGGCATCAGATGGAATCGTCAACGAAAAC 10560 Query 116801 CTGGTCGAGCGTTTCGCTCAGGAGGTGCAG 116830 |||| | || ||| |||||||||||| Sbjct 10561 CTGGGGGCACGCTTCATGCAGGAGGTGCAG 10590 >seq1176 Length=13603 Score = 122 bits (134), Expect = 9e-23 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| | |||||||| || || || | |||||||| |||||||| Sbjct 13387 GACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAG 13328 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| ||||||||||||||||||||| |||| || || || ||| || Sbjct 13327 GATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTG 13268 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 13267 CGCCTGCGCGGCGGC 13253 Score = 113 bits (124), Expect = 5e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| || | |||||||| || || || | |||||||| |||||||| Sbjct 12628 GACAAGGAGGGCATTCCTCCTGACCAGCAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAG 12569 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| ||||||||||||||||||||| |||| || || || ||| || Sbjct 12568 GATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTG 12509 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 12508 CGCCTGCGTGGCGGC 12494 >seq1162 Length=13745 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| || | |||||||| || || |||| |||||||| ||||| || Sbjct 13739 GACAAGGAGGGCATTCCTCCCGACCAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTTGAG 13680 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||||||| |||||||||||||| |||||| |||| || || || ||| | Sbjct 13679 GATGGGCGCACCCTGGCTGACTACAACATCCAAAAGGAGTCCACCCTCCACCTGGTGCTT 13620 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 13619 CGCCTGCGTGGCGGC 13605 >seq73 Length=47289 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || | |||| | ||||||| ||||| || Sbjct 32533 GACAAGGAGGGCATCCCTCCCGACCAGCAGCGCTTAATCTTCACGGGCAAGCAGCTTGAG 32474 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | |||||||| |||||||| ||||||||| ||| ||||||| || || || || Sbjct 32473 GATGGCCGCACCCTGGCCGACTACAGCATCCAGAAAGAGTCCACGCTTCACCTGGTACTG 32414 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 32413 CGCCTGCGTGGCGGC 32399 >seq1233 Length=13172 Score = 105 bits (116), Expect = 7e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 ||||||| || || |||| |||||||| |||||||| |||| |||||||| ||| | Sbjct 13172 ACCAGCAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACCCTTGCCGATT 13113 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| ||| |||||||||| || ||| ||||| || | || ||| Sbjct 13112 ACAACATCCAGAAAGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTGGC 13060 >seq12 Length=84225 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| || | |||||||| || || |||| |||||||| ||||| || Sbjct 179 GACAAGGAGGGCATTCCTCCCGACCAGCAGCGTCTGATCTTTGCGGGCAAGCAGCTTGAG 120 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||||||| |||||||||||||| |||||| |||| || || | ||| | Sbjct 119 GATGGGCGCACCCTGGCTGACTACAACATCCAAAAGGAGTCCACCCTCCACTTGGTGCTT 60 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 59 CGCCTGCGTGGCGGC 45 >seq3338 Length=4919 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 40813 CGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATC 40872 || ||||||| |||||||| ||||| || || | |||||||| ||| ||||||||| Sbjct 4919 CGCCTCATCTTTGCGGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCCGATTACAACATC 4860 Query 40873 CAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| |||| ||||| || ||| ||||| || ||||||| Sbjct 4859 CAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGGGGCGG 4816 >seq585 Length=20866 Score = 93.3 bits (102), Expect = 4e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 40804 GACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 40863 |||||||| || || || | |||||||| |||||||| || | |||||||| ||| Sbjct 783 GACCAGCAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCTGAC 724 Query 40864 TACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||||||||| |||| || || || ||| ||||| || | || ||| Sbjct 723 TACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGCGGTGGC 670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515167684520240