Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq1 425 2e-114 seq313 336 7e-88 >seq1 Length=201307 Score = 425 bits (470), Expect = 2e-114 Identities = 560/771 (73%), Gaps = 8/771 (1%) Strand=Plus/Plus Query 22913 TCACAA-TGGCAAATCCCATTATTCCCTGGATCGGCGGCAAGCGTCGACTCGCTGACCAC 22971 |||||| ||||||| || || || |||||| | || |||||||| || || || ||| | Sbjct 59652 TCACAAGTGGCAAAACCGATCATCCCCTGGTTGGGTGGCAAGCGCCGCCTGGCCGACAAG 59711 Query 22972 ATCATCCCGCGCTTTCCGAAGCACGACTGTTACGTCGAGGTGTTCGCGGGCGGGGCGGC- 23030 || | || | ||||| ||||| ||| ||||||||| ||||||||||||||||| Sbjct 59712 ATTCTTCCCCATTTTCCTAAGCATTCCTGCTACGTCGAGCCTTTCGCGGGCGGGGCGGCA 59771 Query 23031 --GCTGTACTTCATGCGACCGCCAGCCAGGGTCGAGGTGATCAACGATATCAACGGCGAG 23088 ||||| | || || ||| |||| |||||||||| | ||||||||||||||||| Sbjct 59772 CTGCTGTTCGCCAGGCCGGAGCCGGCCAAGGTCGAGGTGCTGAACGATATCAACGGCGAC 59831 Query 23089 CTGGTGAACCTGTATCGCGTCGTTCAGCACCATCTCGAAGAGTTCGTGCGTCAGTTCAAA 23148 ||||| ||||| || ||||| || |||||||| || |||||||||||||| |||||||| Sbjct 59832 CTGGTCAACCTCTACCGCGTGGTGCAGCACCACCTGGAAGAGTTCGTGCGCCAGTTCAAG 59891 Query 23149 TGGGCGCTGACGAGCCGGCAGGTGTTCGAGTGGCTGAAGCATACGGTCCCGGAAACCCTC 23208 ||||||||||| ||||||||| ||||| |||||| ||| | ||| || || || || Sbjct 59892 TGGGCGCTGACCAGCCGGCAGATGTTCAAGTGGCAGAAAGAAACGCGGCCCGAGACGCTG 59951 Query 23209 ACCGACATCCAGCGTGCGGCACGCTTCTACTACCTGCAAAAAAGTTGCTTTGGCGGGAAG 23268 || || || ||||| ||||| ||||||||||||||| | | ||||| |||| ||| Sbjct 59952 ACTGATATTCAGCGGGCGGCCCGCTTCTACTACCTGATGCAGAACTGCTTCAGCGGCAAG 60011 Query 23269 CTTGAAGGGCAGACGTTCGGAACGGCGACGACTACGGTGCCGGGCCTGAACCTGCTGCGC 23328 || || || ||||||||||| || || ||||| || |||||| ||||||||||| || Sbjct 60012 CTGGAGGGTCAGACGTTCGGCACCGCAACGACGGCGCCGCCGGGGCTGAACCTGCTCCGG 60071 Query 23329 ATCGAAGAAGAGCTATCGGCGGCGCACATTCGTCTCGCGAATGCGTACATCGAGCGGCTC 23388 | |||||| | | || || || ||| |||| || ||| | ||| | |||| || Sbjct 60072 CTGGAAGAAACGTTGTCCGCAGCCCACCTTCGCCTGGCGCGTATCTACGTGGAGCATCTG 60131 Query 23389 GATTGGGCGACCTGCATCGATCGTTACGATCGGCCGCACACGCTGTTCTACCTTGATCCG 23448 ||| | ||| | | || ||||| ||||||||||||| |||||| | || ||| Sbjct 60132 CCCTGGCTGGATTGCGTGAAGCGCTACGACAGGCCGCACACGCTCTTCTACATGGACCCG 60191 Query 23449 CCGTACTTCGAGACTGAAGGGTACGGCGTCGCATTCCCTTTCACGGAGTACGAGAAGATG 23508 || |||| || || | || ||||| || | |||| || | |||||| | |||| Sbjct 60192 CCCTACTGGGACACGGCCGGCTACGGAGTGGAATTCGGCATCGAGCAGTACGCGGCGATG 60251 Query 23509 GCCGAGCGGCTGCGGTCGATCAAGGGGCGCGCGATCGTCAGCCTCAACGACCATCCGGAG 23568 || || |||||||||| || || |||||| | |||||| |||| ||||||||| || Sbjct 60252 GCTGATTCCATGCGGTCGATGAAAGGTCGCGCGCTGGTCAGCGTCAATGACCATCCGAAG 60311 Query 23569 ATCCGGCGCGTGTTCGCCGG--TTTCCATATCGAGAGCGTGCCGATTCAGTACACGATAG 23626 || || | |||||||| ||||||| | | || || || | ||||| | | Sbjct 60312 ATGCGCGAAGCCTTCGCCGGCTTTTCCAT-GCAGGTGC-TGGACATCCGCTACACCGTCG 60369 Query 23627 GCGGCGGGAAGGGCGTCGAGCGCCGCGAGCTGATCATTTTCAGTTGGGACG 23677 |||| || |||||| |||| ||||||| | ||| || |||| || Sbjct 60370 GCGGGGGCGGGGGCGTGCCGCGCGCCGAGCTGCTGATTCAGAGCTGGGCCG 60420 >seq313 Length=28640 Score = 336 bits (372), Expect = 7e-88 Identities = 755/1117 (68%), Gaps = 34/1117 (3%) Strand=Plus/Plus Query 17566 AATGGCAACATCACAGGCTATCGCGTCGACTATGCGATCGACTTGTCGGTCGACGGCGGG 17625 || ||| |||||| ||||| |||||||| || | |||||| || |||||||| Sbjct 19194 AACGGCGACATCAACGGCTACCGCGTCGAATACGTGATCGAGCTGAACACCGACGGCGC- 19252 Query 17626 TCGTATAC--GCAGGTGCTGGCCGGTGCGTTCGACGGCAAGACGACGTCGCTCTACGAGC 17683 || ||| | ||||||| | ||||||||||||||||| || || ||| || Sbjct 19253 -CGGCTACCAGACGGTGCTGTCGACCGCGTTCGACGGCAAGACCACCCAGCGCTATACGC 19311 Query 17684 GCTCGCATCGGATCGAGCTGCCGCGCGCGAAAAACGGCTGGCTGATCCGTGTGCGCCGTA 17743 ||||||| || |||||||||||||||||| | |||||| | || |||||||| Sbjct 19312 GCTCGCACCGCATCGAGCTGCCGCGCGCGCGCCAGGGCTGGACCGTGCGCGTGCGCCGCG 19371 Query 17744 TCACGCCGAACGCGCACACGGCGACGATCGCCGACGCGATCAACATCGAAGCGATCACCG 17803 | ||||| ||||| ||| || ||| | ||| | | | || || |||||| Sbjct 19372 TGACGCCCAACGCCAACAGCAACACCATCTCGGACCGCACCGTGGTGGACACGGTCACCG 19431 Query 17804 AAATCATCGATCGGAAGCTTCGCTATCCGATGACGGCGCTCGTCGGCATGACGTTCGACG 17863 | ||| |||| ||||| |||||||||||| ||||||| || ||||| | | |||||| Sbjct 19432 AGATCGTCGACGCCAAGCTGCGCTATCCGATGTCGGCGCTGGTGGGCATCAAGATCGACG 19491 Query 17864 CACGTTCGTTCTCGAGCGTGCCGGTGCGTTCGTATCACGTGCGAGGGATGATCTTCCGTG 17923 | |||| |||| | || || |||| |||||||| || ||| |||| | Sbjct 19492 CGTCGCAGTTCCAGAGCATTCCCACCCGCGCGTACCACGTGCGCGGCCGCATCATCCGGG 19551 Query 17924 TTCCGACAAATTACGATCCGGAGACCCGCACGTATTCGGGCACTTGGGATGGCACGTTCA 17983 | ||| | || || | ||||| ||| ||| ||| ||||| ||||| |||| Sbjct 19552 TGCCGTCCAACTATCACCCGGACCTGCGCCGCTATGACGGCGTGTGGGACGGCACCTTCA 19611 Query 17984 AGGCAGCATGGACGAACAATCCAGCTTGGGTCTACTACGGCCTACTGCTCGACAAGCTCA 18043 || || ||||| ||||| || || ||||| | ||||| ||| | | || | | | Sbjct 19612 AGCTGGCCTGGACCAACAACCCGGCCTGGGTGTTCTACGACCTCATCAGCAACGACCGCT 19671 Query 18044 ACGGATTGGG--CGACCGTGTCGATGCGTCGATGG-TCGACAAGTGGGCGCTGTACGCAA 18100 | || |||| || |||| || ||| | ||| | |||||||||| |||||| | Sbjct 19672 ATGGCCTGGGCACGCGCGTGCCG--GCG-GGCTGGCTGGACAAGTGGGGCCTGTACCAGA 19728 Query 18101 TCGCGCGTCACTGTGACGAGCTGGTATCGGACGGGAAGGGCGGCAAGGAGCCGCGCTTTA 18160 ||| || | || |||||| |||| ||||| ||||| ||||| |||||||| | Sbjct 19729 TCGGCCGCTATTGCGACGAGATGGTCGATGACGGCTTCGGCGGAAAGGAACCGCGCTTCA 19788 Query 18161 CGTGCAA---CTGCGTGATTCAGACAAAGGCGGATGCGTTCAAGGTCGTGCAGGATATCG 18217 | ||||| || | || ||| | ||| || || | | ||| |||||||| ||| Sbjct 19789 CCTGCAACGTCTACCTGCAACAGGC---GGCCGACGCCTACCGGGTGGTGCAGGACTTCG 19845 Query 18218 CAAGTGTCTTTCGCGGGATTTCGTATTGGGGGGCCGGCTCCGTCGTCGCGTCGGCCGATA 18277 | | || ||||| || | ||||||| || | |||| |||| |||||||| | Sbjct 19846 CCTCCATTTTCCGCGGCATGGCTTATTGGGCCAACGCCGCCGTGTTCGCCTCGGCCGACA 19905 Query 18278 TGCCGTCCGATCCGGTCTACCTGTACACGGCCGCGAACGTCGTCGGCGGTTCATTCAAGT 18337 ||||| ||||||||||||| || | || | || ||||| |||| || ||||| | Sbjct 19906 TGCCGGGCGATCCGGTCTACACGTTCTCGTCGGCCAACGTGGTCGATGGCCGCTTCAACT 19965 Query 18338 ACGTCGGCAGCGAGCGCAAGACGCGCTACACGGTCGCGCTCGTCAGCTACAACGA----T 18393 |||||||| | || | ||||||||||| || ||||| || || ||||| | Sbjct 19966 ACGTCGGCTCGGCGCTGACCACGCGCTACACCGTGGCGCTGGTGTCCTGGAACGACATGT 20025 Query 18394 CCGACGAACCAGT-ACAAGCAGGCTGTCGAAGCCGTGCAGGACGACGACGGGATCGCGCG 18452 |||| || || | || || ||||| ||| || || ||| || |||||||| Sbjct 20026 CCGA--AATGGGTCGCCAGAAG---GTCGAGTACGTCGAGAACCGCGAAGGCATCGCGCG 20080 Query 18453 ATACGGCGT-CATCAAGACGGAGGTCACGGCGTTCGGCTGCACGTCGCAGGCGCAGGCGC 18511 || || | || || | | || || || | |||||||||||| |||| | ||||||| Sbjct 20081 CTATGGAATCCAGCAGGTC-GAAGTGACCGGGTTCGGCTGCACCTCGCGCGGCCAGGCGC 20139 Query 18512 ACCGTCTCGGTCGGTGGCTGCTGCTGACGTCGCGGTACGAGACCGGGACGGTCTCGTTTC 18571 |||| |||| |||| |||||||||| || ||||| | ||||| |||| Sbjct 20140 ACCGGATCGGCAAGTGGATGCTGCTGACCTCCAACCTGGAGACGCGCTCGGTCACGTTCT 20199 Query 18572 AGGTCGGGCTCGA--CGGGACGCTTTGTGCGCCGGGACAG-GTGATCGCCGTTGCCGACC 18628 |||||| || || | | ||| ||||| | || ||| |||||| ||| ||||||| Sbjct 20200 CGGTCGGCCTGGATGCCTGCCGC---GTGCGGCCGGGCAGCGTGATCCGCGTGGCCGACC 20256 Query 18629 CTAAGAAGGCCGGCCGCCGGATCGGCGGCCGTATCCG 18665 | ||| |||||||| ||||||||||| ||||| Sbjct 20257 AGCACCTGGCGGGCCGCCGCATCGGCGGCCGAATCCG 20293 Score = 134 bits (148), Expect = 5e-27 Identities = 389/580 (67%), Gaps = 43/580 (7%) Strand=Plus/Plus Query 16600 GCTCGGTGGGCGTTTCGGAAGAGTTCATCGTCTCGCCGTTTCATCGACCGCGAAGGCGGT 16659 ||| || | ||| ||||| | | || ||||| ||||| | | || ||||||| Sbjct 18141 GCTGGGCGCGCGCTTCGGCCGTGAACACCGTCTGGCCGTGGCCAGTCCGGCCGAGGCGGT 18200 Query 16660 GCGCGCGCTGTCGGTGCTGATTCCGGGCTTC---CGCGCGTTCCTGACGTCGGCGCGCGA 16716 ||| ||||||| | ||| | ||||||||| |||||| || || | ||| || | Sbjct 18201 GCGGGCGCTGTGCGCCCTGTTGCCGGGCTTCGAACGCGCGCTCGCGAA--CAGCGAGCAA 18258 Query 16717 CGGCGGCCTCACGTTCGCCGTGTTCAACGGCCGGCGCAATCTCGGCGAGGACGAGCTCGA 16776 ||| ||| | |||||| ||| |||||| |||||||| || ||||| | | Sbjct 18259 CGG-GGCGTGCGCTTCGCCTGCTTCGCCGGCCGCCGCAATCTGTCGGAAGACGAATTGGG 18317 Query 16777 GCATCCGGTGGG-GCGCGACGAGATTCGCATTGCTCCGGTAATCGTCGGCAGCAAGCGCG 16835 |||||||||||| ||| |||| || ||||| || ||||| | | ||| |||| || Sbjct 18318 GCATCCGGTGGGCGCG-GACGCCATCCGCATCGCGCCGGTGCTGGCGGGCGCCAAGAACG 18376 Query 16836 GCGGGCTCTTCAACACGATTCTCGGCGCCGCACTCGTCGCTGTCGGC-GCGATC----GC 16890 |||| || ||| | ||| | || || || | || |||| | |||| ||| || || Sbjct 18377 GCGGCCTGTTCCAGACGGTGCTGGGGGCGGTGCTGATCGCCG-CGGCGGCGTTCTACAGC 18435 Query 16891 GACG----TTCGGTTTCGCGCAGCCGTGGGGCGCATCGCTGATG----GG----GCTCGG 16938 | || ||| || || | | |||| |||| | | | | || ||| || Sbjct 18436 GGCGGCCTGACGGCGGCGTTCA-CGGCGGGGGGCATGGTTCAGGCCACGGCCACGCTGGG 18494 Query 16939 TGCGTCGATGGCATTGGGCGGCATCGTGCAGATGCTCAGTCCGCAACAGGCCGG--GCTC 16996 ||||||| |||||||| ||| ||||||||| ||||| ||| ||| |||| Sbjct 18495 CCTGTCGATGATGCTGGGCGGCGTCGCGCAGATGCTGTCGCCGCAGCAG--CGGCTGCTC 18552 Query 16997 -GCG---GGGA-CGGCC-AACAACGGCACGTCGTACTACTTCAACGGACCCGTGAACAGT 17050 ||| |||| ||||| | |||||| | || ||| |||||||||| ||||| |||| Sbjct 18553 AGCGCCAGGGACCGGCCGGAGAACGGCGCCTCCTACAACTTCAACGGGCCCGTCAACACG 18612 Query 17051 GCGGCGCAGGGCGAACCGGTGCCGCTCGTTATCGGCGAAATGATCGTCG---GCTCGAAG 17107 |||| |||||| | || |||||||| | ||| |||||| |||||| || | | | Sbjct 18613 ACGGCACAGGGCAATCCCGTGCCGCTGCTGTACGGGGAAATGTTCGTCGGCAGCGCCACG 18672 Query 17108 GTGGGCAGCTCGGGAATCTATGCGGAGGATCAGGTTTGAA 17147 | | | |||| |||||| |||| || ||||| |||| Sbjct 18673 AT---CTCCGCGGGCATCTATTCGGAAGACCAGGTATGAA 18709 Score = 95.1 bits (104), Expect = 4e-15 Identities = 118/156 (76%), Gaps = 8/156 (5%) Strand=Plus/Plus Query 16953 TGGGCGGCATCGTGCAGATGCTCAGTCCGCAACA---GGCCGGGCTCG-CGGGGACGG-- 17006 |||||||| | |||||| |||||| ||||| || |||| | || | |||||| Sbjct 23322 TGGGCGGCGTGGTGCAGTTGCTCACGCCGCAGCAACGGGCCCTGAGCGTCAAGGACGGGC 23381 Query 17007 CCAACAACGGCACGTCGTACTACTTCAACGGACCCGTGAACAGTGCGGCGCAGGGCGAAC 17066 || |||||||| |||||||| |||||||||| || || |||| ||||||||||| | | Sbjct 23382 CCGACAACGGCGCGTCGTACAACTTCAACGGCCCGGTCAACACCACGGCGCAGGGCAACC 23441 Query 17067 CGGTGCCGCTCGTTAT-CGGCGAAATGATCGTCGGC 17101 | |||||| | ||| | ||||| ||| |||| ||| Sbjct 23442 CCGTGCCGGT-GTTGTATGGCGAGATGTTCGTGGGC 23476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170655788186730