Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq4178 123 9e-24 seq4354 80.6 1e-10 >seq4178 Length=3623 Score = 123 bits (136), Expect = 9e-24 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 48669 GTCGGCGCCCGCATCCGGCTCCGCCGCAACATCATCGGCATGAGCCAGGAGACGCTGGCT 48728 |||||| |||| |||| | || |||| ||| |||||||||||||||||| |||| Sbjct 2140 GTCGGCAGCCGCGTCCGTATGCGACGCATCATGCTCGGCATGAGCCAGGAGAAACTGGGC 2081 Query 48729 GCGCATCTCGGCATCACCTTCCAGCAGGTCCAGAAATACGAAAAGGGCGCCAACCGCGTC 48788 | | | ||| | || ||||||||||| ||||||||||| |||||| ||||||| ||| Sbjct 2080 GAGGCGTTAGGCCTGACGTTCCAGCAGGTGCAGAAATACGAGAAGGGCACCAACCGTGTC 2021 Query 48789 GGCGCCAGCAGGCTGCAG 48806 ||||||||| |||||||| Sbjct 2020 GGCGCCAGCCGGCTGCAG 2003 >seq4354 Length=3390 Score = 80.6 bits (88), Expect = 1e-10 Identities = 156/226 (69%), Gaps = 12/226 (5%) Strand=Plus/Minus Query 22347 ATCAGCTCGGGCACGTTCACGAACTTCGCGAAGCGGCTGTTGAGCTTGTACTGTCCCGAC 22406 ||||||||||| ||||| ||||| ||||||||||| | | ||||||| | ||||| Sbjct 1625 ATCAGCTCGGGAACGTTGACGAAGGTCGCGAAGCGGGAGACGGGCTTGTATTTACCCGAT 1566 Query 22407 GGCGACAGCTCCCAATCCGTCACCACCTCGCCGAACACCTTCGCCCAAGCGTCAAAGTGC 22466 ||| ||| || || ||| || || ||||| | |||||| ||||| || | | Sbjct 1565 GGCTGCAGTTCGAGCTCGGTCGAGACGTCACCGAAGGTCGACGCCCAGGCGTCGAA-TTC 1507 Query 22467 GAGATGCCGAGATCACGC---AGCATGGGCTCGT---CGAGGTAGCGCATGACCGTGAAC 22520 | ||| || ||||| |||| | | | | |||| ||||| ||||| |||| Sbjct 1506 G---TGC--AGGCCACGCTCGAGCAATGCCACATATCCGAGATAGCGTTGGACCGAGAAC 1452 Query 22521 ATTTCGGCCATGGTGTTGCTCAACGGGGTACCGGTGAGGAACACGA 22566 || ||| | | ||||||| | | |||||| |||| | || ||||| Sbjct 1451 ATCTCGCCGAGGGTGTTGGTGATCGGGGTGCCGGAGGCGAGCACGA 1406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 183592159268364