Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_004333.2 Length=48247 Score E Sequences producing significant alignments: (Bits) Value seq75 104 7e-18 >seq75 Length=46716 Score = 104 bits (114), Expect = 7e-18 Identities = 350/534 (66%), Gaps = 21/534 (4%) Strand=Plus/Minus Query 12770 GCACGTAGTCGTACCAGACGCGAATCTCGCCTTC-GCTCGATGCGTTCAAGCCGGTCGGC 12828 ||| || |||||| ||||||| || || || || ||| | ||||||| |||| | ||| Sbjct 15515 GCATGTCGTCGTAGAAGACGCGGATTTCACCGTCCGCT-GTGGCGTTCAGGCCGCTGGGC 15457 Query 12829 GTGATACCGAGCAGCTTGATCAGCGGAATGTGCGAGACGGCGCTCATCTGCTCCTGGGCC 12888 | || || | |||||||| |||||| ||| || ||| | || |||||| ||| | Sbjct 15456 GAAATGCCCATCAGCTTGACCAGCGGGATGCCGGACACGACAGACAATTGCTCCAGGGAC 15397 Query 12889 TGGGCCTGCAGTGCGTCGAGCCCGGATAGCGGCGTGTT---GAACTGGAAGAATTCTTCC 12945 ||| ||| || || || || ||||| |||||| || |||| ||||| || || Sbjct 15396 TGGTTCTGTAGCGCATCCAGGCCGGACAGCGGCACATTCTCGAACCGGAAG---TCCTCG 15340 Query 12946 GTCGCCTTGTCGA--GGAAAAGAATGTTCCGGTTGTCGCGATAGCGGTTGATCAGCTCGG 13003 || ||||||||| | | | | |||||| || |||||||| ||| ||| Sbjct 15339 CTCTCCTTGTCGATCGCCCACGC--GCCGCGGTTGGTCCGCATGCGGTTGAACAGGTCGA 15282 Query 13004 CGCGCATCGACAA-ATCGACGTTCG---CGCCGGGCATCAACGCCTGCGCGAGGTCCATC 13059 |||| ||| || |||| | || ||||| || | || || | || | | Sbjct 15281 CGCGGC-CGAAAACATCGGTGCCCGGATCGCCGCCCAGGATCGAA---GCCATGTTCGTG 15226 Query 13060 AAGATGCCCGACACGCTGAACTGCTTGACGATGTCCGACACCGACTGGCGTGTGCGCAGC 13119 || || ||| ||| | || | || || ||| | |||||| || |||| Sbjct 15225 CTGAACAGCGGGACGGAGAAGCCATCGATCAGGTTCGCCACGGCCTGGCGCGTCTTCAGC 15166 Query 13120 CAGTTGTCGATGTACGGCATCGCGAGCTGCGTCATGCTGATGCCGGCGAACGAATACGTC 13179 ||||||| || |||||| ||||| ||||||||||| |||||| |||| |||| Sbjct 15165 CAGTTGTTGACGTACGGGATCGCCAGCTGCGTCATCGACATGCCGCCGAAGTTGTACGAA 15106 Query 13180 GGCTTGAGCATGTCGCCGACTGGGCGCGATACGATCGTGTGCAGGCGCGTCGCGTGGACT 13239 | ||| |||| ||| || |||||| ||||| | ||||||| | ||| || Sbjct 15105 GCCTTCAGCAGGTCCGGCACCTCGCGCGACACGATGCTCAGCAGGCGGCTGCTGTGCACC 15046 Query 13240 TCGGTGCCGATCATCCACCACGTCGAGGGTTTGTAGAAGT-CGTCCGCAACGGG 13292 | | || | || |||||| | ||| |||||||| | || ||||| |||| Sbjct 15045 TGGCGCCCCAGCACGAACCACGAGGTGGGCTTGTAGAAATCCGCCCGCATCGGG 14992 Score = 98.7 bits (108), Expect = 3e-16 Identities = 559/890 (63%), Gaps = 28/890 (3%) Strand=Plus/Minus Query 7276 TTAGACGCCGATCAT-CTGCGCGACGGCGAACGGGCGGAAGATCACGGCACCCCACGTGC 7334 ||| ||||||||||| ||| |||| ||| | ||| ||| ||||| |||||||||| Sbjct 20110 TTACACGCCGATCATGCTG-GCGATGGCCATCGGAACCTTGATGACGGCGCCCCACGTGC 20052 Query 7335 CTGCCGACTTCTTCTGACGGAAGTACGACGAGTAACGCTCGATGGAGTGCGCACGCATCT 7394 | |||||||||||| |||| || | || || |||||| |||||| ||||||| Sbjct 20051 CCTGCGACTTCTTCTGCTTGAAGCTGGAGGTGTCGCGGACGATGGCGTGCGCGCGCATCT 19992 Query 7395 TTTCCGTAAAGCCGCAGGTCGCCGTGTCCTTGCCTTCGA-CGCGCGGCGCCCAGAGCTGC 7453 | || || ||| || ||| || || || |||||||| || | ||| ||||||| Sbjct 19991 TCTCGGTGAAGGCGGCGGTTCCCACGTTCTGGCCTTCGATCGAG-TCCGCGATGAGCTGC 19933 Query 7454 ACGAGACGGCCCGACGCCGTGTCATATTCCGGGATCGTCACGAATTCCAGCTTCGGGAAA 7513 || || | ||||| ||||| | || | | | ||| ||| ||| || ||||| Sbjct 19932 ACCAGCTGACCCGAGCCCGTGGCGTACTGCACGGCGGTCTCGACGGTCAGGTTGGGGAAG 19873 Query 7514 ATATCCTTCAGCTTCGCGGCGGCGGCCAGACCGTACTGGTTCGTCTTGCTCAGGTCGGAC 7573 | | |||| | || | || | | ||||||||||||| |||||| ||| Sbjct 19872 TTCTTGGCCAGCATGTCGCTGACGTTGACGTTGAACTGGTTCGTCTTCGTCAGGT-TGAC 19814 Query 7574 ATGGCGGTC-GGCGGCAGACCCATGCGCAGGACGTCCTCCTGCGTGATGATGCCCTGCGA 7632 | | || |||| || | || ||| ||| |||||| | ||| ||| Sbjct 19813 TTCGATCTCGGGCGACATGCACAGCTTCAGCTTGTCGCGGCGCGTGACCAGGCCACGCGT 19754 Query 7633 TTGCGTCTGCAGCACCTGGAACAGCGCGACGACTTCGTTCACGACCGCTTCGACTGCC-- 7690 |||||| |||| | | | | ||||| |||| |||| | | | | || Sbjct 19753 CTGCGTCACCAGCTGGCCGTAGATCTTGACGATGTCGTCATAGACCCCCTGGCCGTCCTT 19694 Query 7691 GGCGAACCCGA---CCACGGCGTCG-------TAGCGGTGATCGGCGCGGACAGCGACGG 7740 | | ||| || |||| || || | | | || |||||| ||||| ||| Sbjct 19693 GCCCGACCAGAGCGTCACGCCGCCGACCGAGATCGGAGCGACCGGCGCCGACAGGTTCGG 19634 Query 7741 ATCGTTGATCAGGCCGTAGTTCTCGAGGCCGGCCACGCCGAACAAGTACGAGCCGTTCAG 7800 ||||| | |||||| ||||||| |||||||| | |||||| ||||| | || | | Sbjct 19633 GTCGTTCAGCAGGCCATAGTTCTGCAGGCCGGCGATGCCGAAGAAGTAGCTGTTGTCCTG 19574 Query 7801 GAACTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGA-CGCGGC 7859 |||||| | || | || Sbjct 19573 GAACTTGTTCAGCACCAACGCGGATGCGATGTTCAGTTCCGACGCCCAGTTGATCTTCGC 19514 Query 7860 CTGCGCCGGCCATTTCCAGCTCGCGCTCGCCCCATCGCGTCCACGTCTGGAAGAAGTACG 7919 ||| || ||||| |||||||||||||| |||||| |||| || ||| || ||||| Sbjct 19513 CTG-ACCTGCCATGTCCAGCTCGCGCTCACCCCATTCCGTCATGGTTTGGTAGTGGTACG 19455 Query 7920 ACTGGCGTTGCGGGTAGTTGATATTCGCGCCGCTGTCGCCGTCGGACGAGTAGTCGCCAT 7979 ||||||| |||||| ||||| | ||||||||| | ||||| | | ||||||| | Sbjct 19454 ACTGGCGCTGCGGGAAGTTGGTGTTCGCGCCGGCGCGGCCGTTGTTGTTGAAGTCGCCGT 19395 Query 7980 ACGTGGCAACCTTCGTCGTCGGCTCTGCGGTGATGAACGCCGCGACCAGCGTCGTCCAGT 8039 | | | || | ||| | || | ||| | ||| |||||| ||||||| Sbjct 19394 AGGACGACACTTCACCCGTGGATTCCACCACCGGGAAGGTTGCGGTCAGCGTGGTCCAGT 19335 Query 8040 CGCCTTTCTTCGACTCGCCGACGAGCTCGGCGGCCTTCATCGGGGCGACG--AGGATGTC 8097 |||| ||||||| ||||| | || | ||||| ||| ||| ||||| || || | | | Sbjct 19334 CGCCCTTCTTCGCTTCGCCCAGGATCACGGCGCCCTGCAT--GGGCGTCGTCAGAACG-C 19278 Query 8098 GATAACCG-ACGGG-TCGACGTAGGTCGTCAGGTAGTTCGGGATGCCCGA 8145 | | | | |||| ||||| ||| || || |||| |||| |||||||| Sbjct 19277 G-CACCAGTTCGGGATCGACATAGTTCAGCATGTAGCTCGGAATGCCCGA 19229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154254146295942