Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq706 159 2e-34 seq332 104 2e-17 seq6499 93.3 3e-14 >seq706 Length=18769 Score = 159 bits (176), Expect = 2e-34 Identities = 250/353 (71%), Gaps = 11/353 (3%) Strand=Plus/Minus Query 99216 CTCGATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCCCCAC 99275 |||||||||| | ||| ||| |||||||||| | || | | || |||||||| Sbjct 11090 CTCGATCTCCGCCTCGCTGACCCACGCGCCCTGCACGCGCAGCGGCTTGGACGCCCCCAT 11031 Query 99276 TGGCAGAAATAACCCGTCACCCATTCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGAT 99335 ||||| || | |||||| ||| ||| ||||| | ||||| || || ||| ||||| Sbjct 11030 CGGCAGGAACAGCCCGTCGCCCTGTCCGATGAGACGGTCGGCGCCCGGCTGGTCGAGGAT 10971 Query 99336 CACCCGGCTATCGGTGAGGGACGCT-GTG---GCGAACGACAGCCGCGAGGGCACGTTGC 99391 || || ||||||| |||| ||| ||||||| |||||||||||||||||| Sbjct 10970 GACGCGCGAGTCGGTGA----CGCTCGTGACCGCGAACGCGAGCCGCGAGGGCACGTTGG 10915 Query 99392 TCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAA 99451 ||||||||| ||||| || || || ||| || ||||| || || || |||||||| | Sbjct 10914 CCTTGATGAGACCCGTGACGACGTCGACGCTCGGACGCTGGGTGGCGAGCACGAGATGGA 10855 Query 99452 TGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGT 99511 ||||| || || || ||||| |||||| || || | |||| || || | | Sbjct 10854 TGCCGCTGGCCCGGGCGAGCTGCGTGATGCGAACGATCGAGTCCTCGACGTC--GCGCGG 10797 Query 99512 AGCCACCCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGTAGGGG 99564 || | |||||||||| || ||||| || || || || |||| | ||||||| Sbjct 10796 GGCGA-CCATCATGAGGTCGGCGAGCTCGTCGACGACGACCAGCAGGTAGGGG 10745 >seq332 Length=27903 Score = 104 bits (114), Expect = 2e-17 Identities = 136/184 (74%), Gaps = 11/184 (6%) Strand=Plus/Plus Query 99387 GTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 99446 |||| |||||| ||||| || | || || ||| ||| |||||||||||||||| || Sbjct 24714 GTTGGCCTTGATCAGGCCGGTGATGACGTCGACGCTGGGACGCTGCGTCGCCAGGATCAG 24773 Query 99447 ATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCT 99504 |||||||||||||| |||||||||||||| | |||| | || ||| | || | | Sbjct 24774 GTGAATGCCGGCCGCGCGCGCCTTCTGCGCCAGGCGGGCGATCAGTT--CTTCGATC--- 24828 Query 99505 TTCTTGTAGCCAC--CCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGTAGG 99562 |||||| |||| ||||||| || || || || || || | || ||||||||| || Sbjct 24829 TTCTTG--CCCACCACCATCATCAGGTCGGCCAGCTCGTCGATGACCACCACGATGGTGG 24886 Query 99563 GGAG 99566 | || Sbjct 24887 GCAG 24890 Score = 95.1 bits (104), Expect = 9e-15 Identities = 116/156 (74%), Gaps = 7/156 (4%) Strand=Plus/Plus Query 99762 AGGGGTCGCCCG-GTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCG 99820 ||| |||| || ||| |||||||| | | ||| | |||||| | |||||||||| Sbjct 25172 AGGCGTCGGCCTTGTACAGCAGCGACAGGATCATGGCGTTGATCCCGACCGACTTGCCCG 25231 Query 99821 ATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGAGATGTCC- 99879 ||||||| | ||| ||||||||||| ||||||||||| ||||||| || | || Sbjct 25232 ATCCGGTGGTGCCCGCCACCAGCAGGTGCGGCATCTTGGCCAGGT---CGGCCACCACCG 25288 Query 99880 --TTGCCCTCGACGTCCTTGCCCACTGCCACGGTCA 99913 ||||| ||| ||||||||||| |||| ||||| Sbjct 25289 GGTTGCCGGCGATGTCCTTGCCCAGCGCCATGGTCA 25324 >seq6499 Length=1589 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 99654 CACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGGGATACCGTTGTACGG 99713 |||||||| | | || || ||||| || ||| || |||||||| |||| || Sbjct 701 CACCGCCTTCTTCGGGTCGGTCACCACCGGGGCGAGGAGATGGGGGATGCCGTCATAGAT 642 Query 99714 GGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCC 99772 || |||||| | ||| ||||| |||| |||||| || | | || || || || Sbjct 641 GGAGAGCTCCAG-CATCTTGGGATCGACCATGATCAGCCGGCACTCCTCGGGCTTCAGCC 583 Query 99773 GGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGC 99832 ||||||||||||| | | ||| | |||||| ||||||||||| ||||| | || Sbjct 582 GGTAGAGCAGCGACAGGATCATGGTGTTGATCGCCACCGACTTGCCCGAGCCGGTGGTGC 523 Query 99833 CAGCCACCAGCAGATGCGGCATCTT 99857 | ||||| ||||| ||||||||||| Sbjct 522 CGGCCACGAGCAGGTGCGGCATCTT 498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354608626610214