Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_005262.3 Length=63882 Score E Sequences producing significant alignments: (Bits) Value seq4354 392 1e-104 seq6107 197 6e-46 seq1581 114 5e-21 >seq4354 Length=3390 Score = 392 bits (434), Expect = 1e-104 Identities = 1385/2104 (66%), Gaps = 143/2104 (7%) Strand=Plus/Plus Query 54883 CGATGGATTTGGACCGACACGCAGCGCGCCGACCGGCTCGTCAACTACTACAACGAGAAC 54942 || ||||| ||| ||||| | | ||| ||||||| || | | ||||||||| | Sbjct 589 CGCTGGATCTGGTCCGACCCCGATCGCACCGACCGCCTGGCGCGCGTCTACAACGACCGC 648 Query 54943 TTCAACAACATCGCGCCGCGCCAGTTCGACGGCTCGCACCTGACGCTGCCGGGCG----T 54998 |||||||||||||| || ||| ||||| || ||||| |||| ||| || |||| | Sbjct 649 TTCAACAACATCGCCCCACGCGCCTTCGATGGATCGCATCTGAAGCTACCCGGCGCCTCT 708 Query 54999 GTCGC---TGCGCTTCAACCTGCGCGAAAACCAGAAGCGCGCCATCTGGCGCGGCATTCA 55055 | ||| || ||| | || || | ||||| || | |||||||||| ||| Sbjct 709 GGCGCCTTTGTTCTTTA---TGGGC----ATCAGAAACGTGGCATCTGGCGCATCATCTC 761 Query 55056 GGAAGG--CGACATGTACCTCGCGCACGCGGTCGGCGCGGGCAAGACGTTCACGATGATC 55113 || || |||| | | ||||||||||| |||||||| |||||||| | |||||| Sbjct 762 GGCGGGTTCGACCTAT--CTCGCGCACGCTGTCGGCGCCGGCAAGACCATGACGATGGCG 819 Query 55114 GCGACGGGCATGGAGGAGCGCCGGCTGGGCCTCTCCAACAAGCCGATGTACGTGGTGCCG 55173 || ||| |||||| |||||||||| ||||| | |||| ||||| ||| || || Sbjct 820 GCCGCGGTGATGGAGCAGCGCCGGCTCGGCCTGATCGCCAAGGCGATGATCGTCGTTCCC 879 Query 55174 AACCACATGCTCGCGCAGTTCGCACGCGAATTCCTCGAGCTCTACCCGGCCGCGAACATC 55233 |||| || |||||| || |||||||| |||| |||||| ||| |||| ||| Sbjct 880 GGCCACTGCCTGGCGCAGGCGGCGCGCGAATTTCTCGCGCTCTATCCGAACGCGCGGATC 939 Query 55234 ATGGTCGCGGACGAGCAGAATTTCCACACGCACAACCGCCGTCGCTTC--GTCGCGCAGG 55291 |||||||||||||| |||||| || | |||| || | ||||||| ||||||| | Sbjct 940 CTGGTCGCGGACGAGACCAATTTCAGCAAGGACAAGCGGCATCGCTTCCTGTCGCGCGCG 999 Query 55292 CCGCGCTCAACAATCCGGATGCGGTCATCATCACGCACTCGGCGTTCGGCCGCATCGGCA 55351 || | | || | ||||||| |||||||||| || || || ||| || |||| Sbjct 1000 GCGACCGCGAC--TTGGGATGCGATCATCATCACCCATTCAGCTTTCCGCTTCATCTCGG 1057 Query 55352 TGTCCGACGAGTACGCGGCGCAGTTCATCTCCGACCAGATCGACGAG-TGGAAAGCCGCG 55410 || || | || || | ||| | ||| ||| |||||| |||| | Sbjct 1058 TGCCCTCGGCGTTCGAGCAACAGATGATC------CAG---GACGAGCTGGA-------G 1101 Query 55411 CTCGACGAGACG-----GAC--AAG-----AGCGAC---CGGATCACGCGCAAGCAGATC 55455 ||| |||||||| ||| ||| |||||| || || ||||||||| | || Sbjct 1102 CTCTACGAGACGCTGCTGACCAAAGTCGAAAGCGACGATCGCGTCTCGCGCAAGCGGCTC 1161 Query 55456 GAGCGCCGCATCGNNNNNNNNNNNNNNNNNNNNNNNGCGAAACAGGGCAG-CGAGAAG-A 55513 || | | || | |||| | || | ||| | | Sbjct 1162 GAAAGGCTCAAGGAGGGCCTGAAAGAGCGGCT-----CGAAGC---GCTGTCGACTCGCA 1213 Query 55514 AGGACAAGGTGCTGTCGTTCGAGGAGCTGGGCGTCGACCGTCTGTTCGTCGACGAATTCC 55573 |||| | |||| | || ||| ||||| |||||| | |||||||||| | Sbjct 1214 AGGATGACCTGCTCACCATCTCCGAGATGGGCATCGACCAGATCATCGTCGACGAGGCGC 1273 Query 55574 ACGAGTTCCGCAAACTCGACTTCGCGACGCAGCAGAGCAACATC-AAGGGCATCGACCCG 55632 | ||||||||||||||| ||| ||||| || | | || | |||||| |||| ||| Sbjct 1274 AGGAGTTCCGCAAACTCTCCTTTGCGAC-CAATATGTCGACGTTGAAGGGCGTCGATCCG 1332 Query 55633 GCCGGCTCGCAGCGCGCGATGGACCTGTTCATGAAGGTCCAATACCTGCGCAGCAAGAAG 55692 |||||||||||||||| ||| |||||| | ||| | ||| | || ||||| Sbjct 1333 AACGGCTCGCAGCGCGCGTGGGATCTGTTCGTCAAGTCGCGCTACGTCGACATGAAGAAC 1392 Query 55693 CCGGGCCGCGCGCTCGTGGCCGCGTCCGGCACGCCGGTCACGAACACGATGGGCGAGCTC 55752 |||||||| ||||||||| ||| |||||||| ||| |||| ||||| | |||||| | Sbjct 1393 CCGGGCCGTGCGCTCGTGCTCGCCTCCGGCACCCCGATCACCAACACCCTCGGCGAGATG 1452 Query 55753 TACACCGCGCAACGCT-TCTTCCAGCCCGAGCAGCTTGCA-GAGGATGGTCTGGATACGT 55810 | | | | ||||||| ||| | ||| |||| ||| ||| ||| | | Sbjct 1453 TTCTCGGTCCAACGCTATCTCGGATATGTGGCA--TTGCTCGAGCGTGGCCTGCACGAAT 1510 Query 55811 TCGACGCGTGGGC--CAACCAGTACGGCGACATCGTTG--CGGGCTTCGAGCAGAACGCC 55866 ||||||| ||||| | ||| | ||| ||| || | | || ||| ||| | | | | Sbjct 1511 TCGACGCCTGGGCGTCGACC--TTCGGTGACGTC-TCGACCGAGCT-CGAACTGCAGCCA 1566 Query 55867 GCCGGCGGCTACGAGGTCGTGAGCCGCTTCGCGAAGTTCCAGAACGTGCCCGAGCTGATG 55926 | || ||| || ||| ||||||||||| ||| ||||| ||||||||||| Sbjct 1567 TCGGGTAAATACAAGCCCGTCTCCCGCTTCGCGACCTTCGTCAACGTTCCCGAGCTGAT- 1625 Query 55927 CGCCGCGTGC-GCTCGTTCATGGACATCCTGACGAGCCAACAGCTCGCGC-AGTACGTCG 55984 ||| || | |||| || ||| || ||| | | | | | |||| ||||||| | Sbjct 1626 CGCGATGTTCCGCTCCATCGCCGACGTCGTGATGCCCGAGGATTT-GCGCCAGTACGT-G 1683 Query 55985 ACCGT-CCGGCGATCGAGGGCGGCGGCCGTCAGATCATGGTCACGCCGGAGCCGTTCG-- 56041 | || ||||||||| | |||| | || |||||| | ||| | |||||| || Sbjct 1684 AAGGTGCCGGCGATCTCGACCGGCAGACGGCAGATCCT---CACAGCAAAGCCGTCCGCT 1740 Query 56042 GC-TACAAGGCATACCAGAAGGCGCTCGAGCAGCGCATCACCGCGATCCGCAACCGCAAG 56100 || | |||| ||||||| | ||||| ||||||||| |||||| | ||| | Sbjct 1741 GCATTCAAGCGTTACCAGACGCTGCTCGGCGAGCGCATCAAGGCGATCGAGGAGCGCGAC 1800 Query 56101 GGCCCGCCGCAGAAGGGGCAGGACATCATCCTGAACGTGATCGCGGACGGCCGTTTCTCG 56160 | |||| || || | |||||| || || || ||| | || ||||| | || Sbjct 1801 CGTGCGCCCGAGCCCGGCGACGACATCCTCTTGTCGGTCATCACCGATGGCCGCCACGCG 1860 Query 56161 GCGATCGACATGCGTTTCGTCGA-CCCGACCGCGCCGAGCGACCCGAACAGCAAGCTGAA 56219 ||||||||| |||| | ||||| |||||| | | | ||| | ||| ||||||||| Sbjct 1861 GCGATCGACCTGCGCCTGGTCGATCCCGACAATGACAA-CGAGGCCGACAACAAGCTGAA 1919 Query 56220 CCAGATGATCG---ACGCCGTG---ATC---GCCGACTACCATGCGGCATCCGACTACCA 56270 |||| | ||| ||||| | ||| | ||| ||| ||| | | ||| Sbjct 1920 CCAGCTCGTCGGCAACGCCTTCCGCATCTGGGGCGA-TAC--TGCCGAGCGCACCTAT-- 1974 Query 56271 GTACACGACGAACGGCAAGG---TCGACCCGATCAAGGGCGCGTCGCACATCATCTTCAC 56327 || | | ||| ||||||| |||| | | | |||||| |||| || |||||| | Sbjct 1975 GTTCGCACCGA-CGGCAAGCCGTTCGAACTGCCC---GGCGCGGCGCAGATGATCTTCTC 2030 Query 56328 GGACATCGGGCTCGGCGAGCAGTCGGCGAAGAACCGCGGCTTC--GACATGAAGGCGTGG 56385 |||| |||| | | ||| |||| |||| ||||||||| | | | | || ||| Sbjct 2031 GGACCTCGGCACCATC-AGC-GTCGA-GAAGTCGCGCGGCTTCTCGGCCT-ATCGC-TGG 2085 Query 56386 AT-CGAAAAGCGTCTGGTCGAGGGCGGCGTGCCCCGCGAGC-AGATCGCGTTCATGCGCG 56443 || || | | | || ||| |||||||| || | | ||||| ||||||| | Sbjct 2086 ATTCGCGACGAG-CTCGTCCGCATGGGCGTGCCG-GCATCCGAAATCGCCTTCATGCAGG 2143 Query 56444 A---CAACAAGGAGCACGCGAAGAAAGAGCGTCTTTTCGCCGACATGCGCGAGGGCAAAA 56500 | ||| ||| | | |||||| | ||| || |||| |||| |||||| ||||| Sbjct 2144 ATTTCAAGAAGTCGGAGGCGAAGCA---GCGCCTGTTCGGCGACGTGCGCGCCGGCAAGG 2200 Query 56501 AGCGCGTGCTGATCGGCGGCAAGGACA---TGGAAACCGGCGTCAACGTGCAGAAGCGCC 56557 ||| | |||||||| || ||||| ||| ||||||||||||| |||| ||||| Sbjct 2201 TCCGCTTCCTGATCGGGAGCTCGGACACGATGGGGACCGGCGTCAACGCGCAGCTGCGCC 2260 Query 56558 TCTACAGCGAGGAGCATCTGGACGCGCCGTGGTTCCCGGCATCCGTCGAGCAGCGCGAGG 56617 || | | | | || || |||| ||||||| | ||| | ||||||||||||||| Sbjct 2261 TCAAGGCCTTGCATCACCTCGACGTGCCGTGGCTGCCGTCGCAGATCGAGCAGCGCGAGG 2320 Query 56618 GGCGCATCATCCGCCAGGGCAACCAGAACAAGCAGGTGCGCATCCGCGCGTGGGCGACGA 56677 | |||||| | ||||||||||||||| || | |||| ||| ||| | ||||| Sbjct 2321 GCCGCATCGTGCGCCAGGGCAACCAGCACGACGAGGTCGATATCTTCGCCTATGCGACCG 2380 Query 56678 AGGGC-AGCTACGACTCGACCATGTGGGGGATGAACGCCCGCAAGGCTCGCTTCATCGAA 56736 ||||| ||| ||| || |||||| || |||| |||||||| |||||||||| Sbjct 2381 AGGGCTCGCT-CGATGCGCAGATGTGGCAGAACAACGAGCGCAAGGCCCGCTTCATCGCC 2439 Query 56737 CAGGCCCTCAACGGCGACGACAGCG-TGCGCTCGCTGGAGGACGTGTCCGAGGCGTCGGC 56795 ||| || ||||||| || || | ||| ||| |||||| || |||| ||| Sbjct 2440 GCGGCTCTTTCCGGCGAC-ACTTCGATCCGCAGGCTCGAGGACATGGGCGAGAGCCAGGC 2498 Query 56796 ------GTTCGACATGGCCGCCGCGCTGGCGTCGGGCGACGAGCGCTACATGAAGCTGGC 56849 ||||| |||||| ||| | |||||||| ||| ||| ||| || ||| Sbjct 2499 CAACCAGTTCGCGATGGCCAAGGCGATCGCGTCGGGTGACCCGCGGCTGATGCAGAAGGC 2558 Query 56850 CGGCCTGAAGGCCGACGTCGAGCGGCTGGAGCGCCTGAGCTACGCGCACCACGACGACCA 56909 ||| || |||||||| ||| |||||| || |||||| || ||| || ||| || || Sbjct 2559 CGGGCTCGAGGCCGACATCGCGCGGCTCGAACGCCTGCGCGCCGCCCATATCGATGATCA 2618 Query 56910 GAAC 56913 | || Sbjct 2619 GCAC 2622 Score = 84.2 bits (92), Expect = 9e-12 Identities = 181/260 (70%), Gaps = 17/260 (7%) Strand=Plus/Plus Query 54379 GACGTCATCGACGCGCTCGGCACCTCGATCTACGAGGACCCGGCGAAGGGCT---GGCAG 54435 || ||| ||| || |||||||| | |||||| | || ||||| | || | ||||| Sbjct 58 GATGTCGTCGCCGAGCTCGGCAGCGCGATCTTCCGCGATCCGGCTGACGGTTCATGGCAG 117 Query 54436 ACGTCCGACGCGTACCTGTCGGGCAACGTCGTGCG-CAAGCTCG---CGG-AGGCGCAGG 54490 ||| | ||||| || ||||| ||| ||| | ||| ||||||| ||| || || || Sbjct 118 ACGGCGGACGCCTATCTGTCAGGCCCCGT-GCGCGACAAGCTCAAAACGGCAGAAGC-GG 175 Query 54491 CCGCCGCGCGCGCCGACCGGAAGTATCAGCGCAACGTCGAGGCGCTGCTCGCGGTGCAGC 54550 | ||||| | || || | || ||| ||||||| ||| ||||||| | || |||| Sbjct 176 CGGCCGCACTCGACG--CAGA-GTACGAGCGCAATGTCACTGCGCTGCAAGGCGTCCAGC 232 Query 54551 CGAAGCCG--CTGGGCCCGACCGACATCACGGTGAAGCTGGGCCAGAATTGGATTCCGGC 54608 | |||| || ||||| |||||||||||| | ||| ||| | ||||| ||||| Sbjct 233 CC--GCCGATCTCAGCCCGTCCGACATCACGGCGCGGCTCGGCGCGCCATGGATCCCGGC 290 Query 54609 CAGCGACGTCGCCGCGTTCG 54628 | ||| ||| ||| |||| Sbjct 291 CGCCGATATCGTCGCTTTCG 310 >seq6107 Length=1809 Score = 197 bits (218), Expect = 6e-46 Identities = 325/461 (70%), Gaps = 16/461 (3%) Strand=Plus/Plus Query 54886 TGGATTTGGACCGACACGCAGCGCGCCGACCGGCTCGT-CAACTACTACAACGAGAACTT 54944 ||||| ||| |||| | | ||| |||| || || | | || |||||| || | || Sbjct 964 TGGATCTGGTCCGATCCCGATCGCACCGATCGCCTGGCGCGGCT-CTACAATGACACGTT 1022 Query 54945 CAACAACATCGCGCCGCGCCAGTTCGACGGCTCGCACCTGACGCTGCCGGGCGTGTC-GC 55003 ||||||||||| ||| ||||| ||||| || ||||||| | ||| || |||| || | Sbjct 1023 CAACAACATCGTGCCCCGCCATTTCGATGGAACGCACCTCAAGCTTCCCGGCGCCTCTGG 1082 Query 55004 TGCGCTTCAACCTGCGCGAAAACCAGAAGCGCGCCATCTGGCGCGGCA----TTCAGGAA 55059 || ||| || | | |||||||||| |||||||||||| || ||| || | Sbjct 1083 CGC-CTTTTCTCTTTATGGACACCAGAAGCGGGCCATCTGGCGCATCATCGCTTCCGGCA 1141 Query 55060 GGCGACATGTACCTCGCGCACGCGGTCGGCGCGGGCAAGACGTTCACGATGATCGCGACG 55119 | || || |||||||||| |||||||| ||||||||| || |||| |||| || Sbjct 1142 G----CACCTATGTCGCGCACGCCGTCGGCGCCGGCAAGACGCTCTCGATCGCCGCGGCG 1197 Query 55120 GGCATGGAGGAGCGCCGGCTGGGCCTCTCCAACAAGCCGATGTACGTGGTGCCGAACCAC 55179 ||||||| | |||||||| ||||| ||||||| ||||| ||| ||||| ||| Sbjct 1198 ATCATGGAGCAACGCCGGCTCGGCCTGATCAACAAGGCGATGCTCGTCGTGCCAGGCCAT 1257 Query 55180 ATGCTCGCGCAGTTCGCACGCGAATTCCTCGAGCTCTACCCGGCCGCGAACATCATGGTC 55239 ||||||||| ||| ||||| ||||| | |||||| || ||| |||| | ||| Sbjct 1258 TGCCTCGCGCAGGCCGCGCGCGAGTTCCTGGCGCTCTATCCCAATGCGCGCATCCTCGTC 1317 Query 55240 GCGGACGAGCAGAATTTCCACACGCACAACCGCCGTCGCTTC--GTCGCGCAGGCCGCGC 55297 || |||||| ||||||| | | | || || | |||||| ||||||| || ||| Sbjct 1318 GCCGACGAGACGAATTTCGTGAAGGAAAAGCGTCACCGCTTCCTGTCGCGC--GCGGCGA 1375 Query 55298 TCAACAATCCGGATGCGGTCATCATCACGCACTCGGCGTTC 55338 | || ||||||| |||||||||| || || || ||| Sbjct 1376 CCGCGAACTGGGATGCGATCATCATCACCCATTCCGCCTTC 1416 >seq1581 Length=10720 Score = 114 bits (126), Expect = 5e-21 Identities = 232/336 (69%), Gaps = 15/336 (4%) Strand=Plus/Plus Query 10140 ATGGCAAGCGTAAACAAGGTAATTTTGGTTGGAAACTTAGGGGCCGATCCTGAAGTCCGT 10199 |||||| || ||||| || ||| | || || ||| | || ||| || |||||||| Sbjct 10287 ATGGCATCGGTTAACAAAGTCATTCTCGTGGGCAACCTGGGTCGCGACCCGGAAGTCCGC 10346 Query 10200 TACCTGCCGAGCGGCGACGCGGT-TGCGAACATCCGTC--TCGCGACGACCGATCGA--T 10254 ||| || ||| | ||| | ||| ||||| ||| |||| |||||| || | | Sbjct 10347 TACAGCCCCGACGGGGCCGCAATCTGC-AACAT--GTCCATCGCCACGACC--TCCACCT 10401 Query 10255 ACAAGGACAAGGCGAGCGGCGACATCAAGGAGGCGACTGAATGGCACCGCGTCTCGTTCT 10314 ||||||||||| ||||| | || | || |||||||||||||| | | Sbjct 10402 GGAAGGACAAGGCATCGGGCGAACGCCGCGAAGAAACCGAATGGCACCGCGTGGTCATGT 10461 Query 10315 TCGGTCGGCTGGCTGAGATCGTCGACGAGCACCTGCGCAAGGGCGCATCTGTCTACATCG 10374 | || ||||| || |||| || ||| ||||| |||||| || |||||||||| Sbjct 10462 ACAACCGCCTGGCCGAAATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTCTACATCG 10521 Query 10375 AGGGGCGCATCAAGACGCGGAAGTGGCAGGATCAA----TCCGGCCAGGATCGTTACACG 10430 |||| ||| | ||||| || |||||||| || ||| ||||| || || |||| Sbjct 10522 AGGGCCGCCTGAAGACCCGCAAGTGGCAAGA-CAAGGACACCGGCGCTGACCGCTACAGC 10580 Query 10431 ACCGAGATCGTCGCTGACCGCATGCAGATGCTCGGC 10466 ||||| |||||||| |||| ||||||||||| ||| Sbjct 10581 ACCGAAATCGTCGCCGACCAGATGCAGATGCTGGGC 10616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 204277683473877