Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_005263.2 Length=48177 Score E Sequences producing significant alignments: (Bits) Value seq75 150 6e-32 >seq75 Length=46716 Score = 150 bits (166), Expect = 6e-32 Identities = 592/905 (65%), Gaps = 52/905 (6%) Strand=Plus/Minus Query 7822 GCGTTATACGCCGAGCAT-CTGCGCAACCGCGAACGGGCGGAAGATCACCGCGCCCCAGG 7880 |||||| ||||||| ||| ||| || | || | ||| ||| || |||||||| | Sbjct 20113 GCGTTACACGCCGATCATGCTG-GCGATGGCCATCGGAACCTTGATGACGGCGCCCCACG 20055 Query 7881 TGCCCGCCGACTTCTTCTGACGGAAGTACGACGAATAGCGCTCGATCGAATGCGCACGCA 7940 ||||| |||||||||||| |||| || | | ||| |||| | ||||| |||| Sbjct 20054 TGCCCTGCGACTTCTTCTGCTTGAAGCTGGAGGTGTCGCGGACGATGGCGTGCGCGCGCA 19995 Query 7941 TCTTCTCGGTGAACCCGCAGGTTGCCGTGTCCTTACCTTCGACACGCGGCGCCCA-GAGC 7999 ||||||||||||| || |||| || || || ||||||| || | | | | |||| Sbjct 19994 TCTTCTCGGTGAAGGCGGCGGTTCCCACGTTCTGGCCTTCGAT-CGAGTCCGCGATGAGC 19936 Query 8000 TGCACGAGTCGGCCCGATGCCGTGTCGTACTCCGGAATCGTCACGAATTCCAGCTTCGGG 8059 ||||| || | ||||| ||||| |||||| | ||| ||| ||| || ||| Sbjct 19935 TGCACCAGCTGACCCGAGCCCGTGGCGTACTGCACGGCGGTCTCGACGGTCAGGTTGGGG 19876 Query 8060 AAGATTTCCTTCAGCTTG--GCTGCGGCCGACAGGCCGTATTGGTTCGTCTTGCTCAGAT 8117 ||| | | |||| || |||| | ||| | | | ||||||||||| |||| | Sbjct 19875 AAGTTCTTGGCCAGCATGTCGCTGACGTTGAC--GTTGAACTGGTTCGTCTTCGTCAGGT 19818 Query 8118 CGGACATCGCCGTCGG-CGGCAGGCCCATATGCAG---GACAGCTTCTTGCGTGATGATG 8173 | || ||| |||| || || || || | ||| | | || | |||||| | | Sbjct 19817 TG-ACTTCGATCTCGGGCGACATGCACAGCTTCAGCTTGTC-GCGGC--GCGTGACCAGG 19762 Query 8174 CCCTGCGACTGCGTTTGCAGCACCTGGA---ACAGCGTGACGACTTCGTTCACGACCGCT 8230 || ||| |||||| || || |||| | | | |||||| |||| |||| | Sbjct 19761 CCACGCGTCTGCGT---CACCAGCTGGCCGTAGATCTTGACGATGTCGTCATAGACCCCC 19705 Query 8231 TCGACAGCCGG---CGACC-----------CCGACCACGGCGTGGTCGCAGTGATCGGTG 8276 | | | || ||||| ||| | || || | ||| || || ||| | Sbjct 19704 TGGCCGTCCTTGCCCGACCAGAGCGTCACGCCGCCGAC--CGAGATCGGAGCGACCGGCG 19647 Query 8277 CAGACAGCGACGGATCGTTGATCAGGCCGTAGTTTTCCAGGCCTGCCACGCCGAACAGAT 8336 | ||||| ||| ||||| | |||||| ||||| | |||||| || | |||||| | | Sbjct 19646 CCGACAGGTTCGGGTCGTTCAGCAGGCCATAGTTCTGCAGGCCGGCGATGCCGAAGAAGT 19587 Query 8337 ACGAGCCGTTCAGGAACTTCGCGAGGCCGAGGGCCGACGAATAGTTCAGTTCGCTCGCCA 8396 | | || | ||||||| || | | || || | ||||||||| |||| Sbjct 19586 AGCTGTTGTCCTGGAACTTGTTCAGCACCAACGCGGATGCGATGTTCAGTTCCGACGCCC 19527 Query 8397 GGTCGA-CGCGGCCCGCGCCGGCCATTTCCAGCTCGCGCTCGCCCCATCGCGTCCACGTC 8455 || || | ||| | || ||||| |||||||||||||| |||||| |||| || Sbjct 19526 AGTTGATCTTCGCCTGA-CCTGCCATGTCCAGCTCGCGCTCACCCCATTCCGTCATGGTT 19468 Query 8456 TGGAAGAAATACGACTGACGTTGCGGGTAGTTGATGTTCGTGCCGCTGTCGCCGTCGGAC 8515 ||| || |||||||| || |||||| ||||| |||||| |||| | ||||| | Sbjct 19467 TGGTAGTGGTACGACTGGCGCTGCGGGAAGTTGGTGTTCGCGCCGGCGCGGCCGTTGTTG 19408 Query 8516 GAGTAGTCGCCATACGTGGCGAC-CTTC-GTCGTCGGCTCGGCGGTGATGAATGCCGCGA 8573 | ||||||| || | |||| |||| ||| | || | ||| | ||| Sbjct 19407 TTGAAGTCGCCGTA--GGACGACACTTCACCCGTGGATTCCACCACCGGGAAGGTTGCGG 19350 Query 8574 CCAGCGTCGTCCAGTCGCCTTTCTTCGATTCGCCGACGAGCTCGGCGGCCTTCATCGGAG 8633 |||||| ||||||||||| ||||||| |||||| | || | ||||| ||| ||| || | Sbjct 19349 TCAGCGTGGTCCAGTCGCCCTTCTTCGCTTCGCCCAGGATCACGGCGCCCTGCATGGGCG 19290 Query 8634 -CGACGAGGATGTCGATCACC--GACGGG-TCGACGTAGGTCGTCAGGTAGTTCGGGATA 8689 || | || | || |||| |||| ||||| ||| || || |||| |||| || Sbjct 19289 TCGTC-AGAA---CGCGCACCAGTTCGGGATCGACATAGTTCAGCATGTAGCTCGGAATG 19234 Query 8690 CCCGA 8694 ||||| Sbjct 19233 CCCGA 19229 Score = 91.5 bits (100), Expect = 5e-14 Identities = 162/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 13293 GTCCGACACCGACTGGCGCGTGCGCAGCCAGTTGTCGATGTACGGCATCGCGAGCTGCGT 13352 || || ||| | ||||||||| ||||||||||| || |||||| ||||| |||||||| Sbjct 15193 GTTCGCCACGGCCTGGCGCGTCTTCAGCCAGTTGTTGACGTACGGGATCGCCAGCTGCGT 15134 Query 13353 CATGCTGATGCCGGCGAACGAATACGTCGGCTTGAGCATGTCGCCTACCGGCCGGGACAC 13412 ||| |||||| |||| |||| | ||| |||| ||| ||| || ||||| Sbjct 15133 CATCGACATGCCGCCGAAGTTGTACGAAGCCTTCAGCAGGTCCGGCACCTCGCGCGACAC 15074 Query 13413 GATCGTGTGCAGGCGCGTCGCATGCACTTCGCTGCCGATCATCCACCACGTCGACGGTTT 13472 ||| | ||||||| | ||||| | || || | || |||||| | || || Sbjct 15073 GATGCTCAGCAGGCGGCTGCTGTGCACCTGGCGCCCCAGCACGAACCACGAGGTGGGCTT 15014 Query 13473 GTAGAAAT-CGTCCGCGACCGGGTTGATCG-AGTTGTAGTTGTTCGGCGTC 13521 |||||||| || |||| | ||||||| ||| |||||| || |||||| Sbjct 15013 GTAGAAATCCGCCCGC-ATCGGGTTG-TCGCTGTTGTACAGGTAGGGCGTC 14965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154030167573282