Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_005284.1 Length=54865 Score E Sequences producing significant alignments: (Bits) Value seq1 425 2e-114 seq313 291 3e-74 >seq1 Length=201307 Score = 425 bits (470), Expect = 2e-114 Identities = 560/771 (73%), Gaps = 8/771 (1%) Strand=Plus/Plus Query 22174 TCACAA-TGGCAAATCCCATTATTCCCTGGATCGGCGGCAAGCGTCGACTCGCTGACCAC 22232 |||||| ||||||| || || || |||||| | || |||||||| || || || ||| | Sbjct 59652 TCACAAGTGGCAAAACCGATCATCCCCTGGTTGGGTGGCAAGCGCCGCCTGGCCGACAAG 59711 Query 22233 ATCATCCCGCGCTTTCCGAAGCACGACTGTTACGTCGAGGTGTTCGCGGGCGGGGCGGC- 22291 || | || | ||||| ||||| ||| ||||||||| ||||||||||||||||| Sbjct 59712 ATTCTTCCCCATTTTCCTAAGCATTCCTGCTACGTCGAGCCTTTCGCGGGCGGGGCGGCA 59771 Query 22292 --GCTGTACTTCATGCGACCGCCAGCCAGGGTCGAGGTGATCAACGATATCAACGGCGAG 22349 ||||| | || || ||| |||| |||||||||| | ||||||||||||||||| Sbjct 59772 CTGCTGTTCGCCAGGCCGGAGCCGGCCAAGGTCGAGGTGCTGAACGATATCAACGGCGAC 59831 Query 22350 CTGGTGAACCTGTATCGCGTCGTTCAGCACCATCTCGAAGAGTTCGTGCGTCAGTTCAAA 22409 ||||| ||||| || ||||| || |||||||| || |||||||||||||| |||||||| Sbjct 59832 CTGGTCAACCTCTACCGCGTGGTGCAGCACCACCTGGAAGAGTTCGTGCGCCAGTTCAAG 59891 Query 22410 TGGGCGCTGACGAGCCGGCAGGTGTTCGAGTGGCTGAAGCATACGGTCCCGGAAACCCTC 22469 ||||||||||| ||||||||| ||||| |||||| ||| | ||| || || || || Sbjct 59892 TGGGCGCTGACCAGCCGGCAGATGTTCAAGTGGCAGAAAGAAACGCGGCCCGAGACGCTG 59951 Query 22470 ACCGACATCCAGCGTGCGGCACGCTTCTACTACCTGCAAAAAAGTTGCTTTGGCGGGAAG 22529 || || || ||||| ||||| ||||||||||||||| | | ||||| |||| ||| Sbjct 59952 ACTGATATTCAGCGGGCGGCCCGCTTCTACTACCTGATGCAGAACTGCTTCAGCGGCAAG 60011 Query 22530 CTTGAAGGGCAGACGTTCGGAACGGCGACGACTACGGTGCCGGGCCTGAACCTGCTGCGC 22589 || || || ||||||||||| || || ||||| || |||||| ||||||||||| || Sbjct 60012 CTGGAGGGTCAGACGTTCGGCACCGCAACGACGGCGCCGCCGGGGCTGAACCTGCTCCGG 60071 Query 22590 ATCGAAGAAGAGCTATCGGCGGCGCACATTCGTCTCGCGAATGCGTACATCGAGCGGCTC 22649 | |||||| | | || || || ||| |||| || ||| | ||| | |||| || Sbjct 60072 CTGGAAGAAACGTTGTCCGCAGCCCACCTTCGCCTGGCGCGTATCTACGTGGAGCATCTG 60131 Query 22650 GATTGGGCGACCTGCATCGATCGTTACGATCGGCCGCACACGCTGTTCTACCTTGATCCG 22709 ||| | ||| | | || ||||| ||||||||||||| |||||| | || ||| Sbjct 60132 CCCTGGCTGGATTGCGTGAAGCGCTACGACAGGCCGCACACGCTCTTCTACATGGACCCG 60191 Query 22710 CCGTACTTCGAGACTGAAGGGTACGGCGTCGCATTCCCTTTCACGGAGTACGAGAAGATG 22769 || |||| || || | || ||||| || | |||| || | |||||| | |||| Sbjct 60192 CCCTACTGGGACACGGCCGGCTACGGAGTGGAATTCGGCATCGAGCAGTACGCGGCGATG 60251 Query 22770 GCCGAGCGGCTGCGGTCGATCAAGGGGCGCGCGATCGTCAGCCTCAACGACCATCCGGAG 22829 || || |||||||||| || || |||||| | |||||| |||| ||||||||| || Sbjct 60252 GCTGATTCCATGCGGTCGATGAAAGGTCGCGCGCTGGTCAGCGTCAATGACCATCCGAAG 60311 Query 22830 ATCCGGCGCGTGTTCGCCGG--TTTCCATATCGAGAGCGTGCCGATTCAGTACACGATAG 22887 || || | |||||||| ||||||| | | || || || | ||||| | | Sbjct 60312 ATGCGCGAAGCCTTCGCCGGCTTTTCCAT-GCAGGTGC-TGGACATCCGCTACACCGTCG 60369 Query 22888 GCGGCGGGAAGGGCGTCGAGCGCCGCGAGCTGATCATTTTCAGTTGGGACG 22938 |||| || |||||| |||| ||||||| | ||| || |||| || Sbjct 60370 GCGGGGGCGGGGGCGTGCCGCGCGCCGAGCTGCTGATTCAGAGCTGGGCCG 60420 >seq313 Length=28640 Score = 291 bits (322), Expect = 3e-74 Identities = 650/959 (68%), Gaps = 30/959 (3%) Strand=Plus/Plus Query 16815 GGACACGTCGAACGGCAATATCACGGGCTATCGCGTCGACTATGCGATCGACTTGTCGGT 16874 |||||| ||||||| | |||| ||||| |||||||| || | |||||| || Sbjct 19184 GGACACCAAGAACGGCGACATCAACGGCTACCGCGTCGAATACGTGATCGAGCTGAACAC 19243 Query 16875 CGACGGCGGGTCGTATGCGCAGGTGCTGGCCGGTGCGTTCGACGGCAAGACGACGTCGCT 16934 |||||||| || | ||||||| | ||||||||||||||||| || || Sbjct 19244 CGACGGCGCCGGCTACCAGACGGTGCTGTCGACCGCGTTCGACGGCAAGACCACCCAGCG 19303 Query 16935 CTATGAGCGCTCGCATCGGATCGAGCTGCCGCGCGCAAAAAATGGTTGGTTGATCCGCGT 16994 |||| ||||||||| || ||||||||||||||||| | || ||| | ||||| Sbjct 19304 CTATACGCGCTCGCACCGCATCGAGCTGCCGCGCGCGCGCCAGGGCTGGACCGTGCGCGT 19363 Query 16995 GCGCCGCATCACGCCGAACGCGCACACGGCGACGATCGCCGACGCGATCAACGTCGAGG- 17053 ||||||| | ||||| ||||| ||| || ||| | ||| || || ||| | || Sbjct 19364 GCGCCGCGTGACGCCCAACGCCAACAGCAACACCATCTCGGAC-CG--CACCGTGGTGGA 19420 Query 17054 --CGATTACCGAGATCATCGATCGGAAGCTCCGCTATCCGATGACGGCGCTTGTCGGTAT 17111 || | ||||||||| |||| ||||| |||||||||||| ||||||| || || || Sbjct 19421 CACGGTCACCGAGATCGTCGACGCCAAGCTGCGCTATCCGATGTCGGCGCTGGTGGGCAT 19480 Query 17112 GACGTTCGACGCACGTTCGTTCTCGAGCGTGCCAGTGCGTTCGTATCACGTGCGAGGGAT 17171 | | ||||||| |||| |||| | || || |||| |||||||| || Sbjct 19481 CAAGATCGACGCGTCGCAGTTCCAGAGCATTCCCACCCGCGCGTACCACGTGCGCGGCCG 19540 Query 17172 GATCTTCCGAGTCCCGACAAACTACGACCCGGAGACGCGTACGTACTCGGGTACATGGGA 17231 ||| |||| || ||| | ||||| ||||||| ||| || || ||||| Sbjct 19541 CATCATCCGGGTGCCGTCCAACTATCACCCGGACCTGCGCCGCTATGACGGCGTGTGGGA 19600 Query 17232 CGGTACGTTCAAGGCAGCATGGACGAACAATCCGGCGTGGGTCTACTACGGCCTACTTCT 17291 ||| || |||||| || ||||| ||||| ||||| ||||| | ||||| ||| | Sbjct 19601 CGGCACCTTCAAGCTGGCCTGGACCAACAACCCGGCCTGGGTGTTCTACGACCTCATCAG 19660 Query 17292 CGACAAGCTCAACGGATTGGG--TGACCGTGTCGATGCTTCGATGG-TCGATAAGTGGGC 17348 | || | | | | || |||| | |||| || || | ||| | || ||||||| Sbjct 19661 CAACGACCGCTATGGCCTGGGCACGCGCGTGCCG--GC-GGGCTGGCTGGACAAGTGGGG 19717 Query 17349 GCTGTACGCAATCGCGCGTTACTGCGACGAACTCGTGTCCGACGGGAAGGGCGGCAAGGA 17408 |||||| |||| || || |||||||| | || ||||| ||||| ||||| Sbjct 19718 CCTGTACCAGATCGGCCGCTATTGCGACGAGATGGTCGATGACGGCTTCGGCGGAAAGGA 19777 Query 17409 GCCGTGCTTCACCTGCAA---CTGCGTGCTTCAGACGCGCGCGGACGCATTCAAGGTGGT 17465 ||| ||||||||||||| || | ||| ||| || || ||||| | | |||||| Sbjct 19778 ACCGCGCTTCACCTGCAACGTCTACCTGCAACAGGCG---GCCGACGCCTACCGGGTGGT 19834 Query 17466 ACAGGATCTCGCGAGCGTCTTTCGCGGCATTTCGTACTGGGGCGCCGGGTCGGTGGTCGC 17525 ||||| |||| | | || |||||||| | || |||| | || | ||| |||| Sbjct 19835 GCAGGACTTCGCCTCCATTTTCCGCGGCATGGCTTATTGGGCCAACGCCGCCGTGTTCGC 19894 Query 17526 GTCGGCCGATATGCCGTCCGATCCGGTCTACCTGTACACGGCCGCGAATGTCGTCGGTGG 17585 |||||||| |||||| ||||||||||||| || | || | || || || |||| ||| Sbjct 19895 CTCGGCCGACATGCCGGGCGATCCGGTCTACACGTTCTCGTCGGCCAACGTGGTCGATGG 19954 Query 17586 TTCATTCAAGTACGTCGGCAGCGAACGCAAGACGCGTTACACGGTCGCGCTCGTCAGCTA 17645 ||||| ||||||||| | | | ||||| ||||| || ||||| || || Sbjct 19955 CCGCTTCAACTACGTCGGCTCGGCGCTGACCACGCGCTACACCGTGGCGCTGGTGTCCTG 20014 Query 17646 CAACGA----TCCGACGAACCAGT-ACAAGCAAGCTGTCGAGCCCGTGCAGGACGACGAC 17700 ||||| ||||| || || | || ||| |||||| ||| || || ||| Sbjct 20015 GAACGACATGTCCGA--AATGGGTCGCCAG-AAG--GTCGAGTACGTCGAGAACCGCGAA 20069 Query 17701 GGGATCGCGCGATATGGCGT-CATCAAGACGGAGGTCACGGCGTTCGGCTGCACGTCGC 17758 || |||||||| ||||| | || || | | || || || | |||||||||||| |||| Sbjct 20070 GGCATCGCGCGCTATGGAATCCAGCAGGTC-GAAGTGACCGGGTTCGGCTGCACCTCGC 20127 Score = 136 bits (150), Expect = 1e-27 Identities = 393/599 (66%), Gaps = 53/599 (9%) Strand=Plus/Plus Query 14382 TGATCGAGCTTTTCGAGGTCGACTGC-ACGGAAATCGGCGCCGACATGCTGCGCTTCCAT 14440 || ||||||| |||||| | || ||| |||| ||||||| | | | ||||| |||||| Sbjct 16639 TGGTCGAGCTGTTCGAGCTGGA-TGCGACGGCCATCGGCGGCCAGGTCCTGCGTTTCCAT 16697 Query 14441 GGACACATGCA-GTCGACGTCGATCGTGTGGCAAGGGAACGAGTACAAGCCGTGGCCGAT 14499 || ||| ||| || | || | ||| |||||| ||| | ||||| | |||||| | || Sbjct 16698 GGCTACACGCAAGTGGGCGCC-ATCTGGTGGCAGGGGCAGCAGTACGATCCGTGGGCCAT 16756 Query 14500 ACAGGCCGCGGGCTTCGAGCAGACATCCGACGCGCAGCAGCCATCGCCGACGCTGCGGGT 14559 | |||| || ||||| | | || | ||||||||| |||||||||||| ||| Sbjct 16757 CCGCGCCGAAGGGTTCGAACTGGTGGGAGAGGGGCAGCAGCCCTCGCCGACGCTGTCGGT 16816 Query 14560 GGGCGACAT------------CAACGGAA---------------CGATTTCGGCGCTGTG 14592 |||| | || ||| || | ||| |||||||| || Sbjct 16817 GGGCAATATCGGGCAGGATGACAAAGGTAAGCCGGTGGTGGGCGTGATCTCGGCGCTCTG 16876 Query 14593 CGTTGCGCTTGGCGATCTCGTCGGCGCGAAAGTGTTCCGGCGCCGAACGCTCGCGCGCTA 14652 ||| || | || || || |||||| ||| | |||||| ||||||| | || Sbjct 16877 CGTCCACCTGGATGACCTGGTGGGCGCGCGCGTGGTGGTGCGCCGCACGCTCGGGAAGTA 16936 Query 14653 CCTCGACGCCGTGAATTTTCCGGCCGGCAATCCGACGGCGGACCCGAACGAAGAAATGCC 14712 || || || || ||||| ||| |||||||| || || |||||| | ||||| |||| Sbjct 16937 TCTGGATGCGGTCAATTTCCCGCAGGGCAATCCCACCGCCGACCCGCAGGAAGAGTTGCC 16996 Query 14713 GACGCAGCAGTGGCGGATCGAGCAGAAGAGCGACGAG-CAGCCGGGTTTGCACGTTGAAT 14771 | | | |||| | | |||| |||| || |||| | |||| | | || |||| Sbjct 16997 GCAGGAAGTCTGGCTGGTGCAGCAAAAGACCGCCGAGACCGCCGAGGT----GGTGGAAT 17052 Query 14772 TCACGCTCTCGTCGCCGCTCGACTTCGGTGGCCAGCAACTGCCGAAACGGCAGATTAT-- 14829 || |||| || |||| || ||| ||||||| | ||||| | |||| ||| || Sbjct 17053 TCTCGCTGTCCAGCGCGCTGGATTTCAATGGCCAGAAGCTGCCCGACCGGCCGATCATCG 17112 Query 14830 ----------TTCG-ATCTGC-CAATGG-GAGTATCGCGGCCCCGAGTGCGGCTATACCG 14876 ||| |||| ||| || | |||||||||||| | ||||| || |||| Sbjct 17113 CTGGCGTGTGCTCGTGGCTGCGCAAGGGCGGCTATCGCGGCCCCTACTGCGGTTACACCG 17172 Query 14877 G-TGCGGCGTGTTTCGACAAGGACGACAACCCGGTGAGCGATCCCGCGCTCGATCGGTG 14934 | || || || |||||| ||| | ||| ||||| |||||||| |||| || || || Sbjct 17173 GCAGCCGCATG-TTCGACCTGGATGGCAAGCCGGTCAGCGATCCGACGCTGGACCGCTG 17230 Score = 134 bits (148), Expect = 5e-27 Identities = 683/1062 (64%), Gaps = 94/1062 (9%) Strand=Plus/Plus Query 15419 GCCGGGAGGCTACGTCGCGCGACTAGTCGGCCGCCAGTTCGTCCATGGCGTGCACGACTG 15478 ||||| |||| | |||| ||| | || |||||||||| || ||||||| ||| || Sbjct 17668 GCCGGAGGGCTTCCAGGCGCCGCTATTGGGGCGCCAGTTCGCGCACGGCGTGCTCGATTG 17727 Query 15479 CTACGCGATCGTGCGCGACTGGTAT-CTCGCCGAGCGCGGCGTCGCGTTACCCGACTTCG 15537 ||| || | ||||||||||||||| | || ||| |||||| || | | || ||||| Sbjct 17728 CTATTCGCTGGTGCGCGACTGGTATGCGCG-CGAACGCGGCATCAAGCTGCCGGACTTTC 17786 Query 15538 AGCGCGAGGACGAGTGGTGGAACGATGGCCGATC---GAATCTCTACCTCAACCACTATC 15594 ||||||||| | |||||| | |||||| | | || ||| | | ||||| Sbjct 17787 CGCGCGAGGATGGCTGGTGGGAACCTGGCCGCGCCGGCGACCTGTACATGGATCACTACG 17846 Query 15595 AGGACGCTGGCTTTCTCGACGTCGGCCGCGACGTGA--CGTTGCAGGTCGGCGACGTGCT 15652 || || ||||| ||| | | || || | ||| || || | ||||||||| | Sbjct 17847 CCGAGGCGGGCTT--TCGCCCGCTGCAGCCGCATGAAGCGCTGGCGCCGGGCGACGTGGT 17904 Query 15653 GCTGATGCAGATCCG------------CAGCAAGAACGGCGT---------------GCC 15685 | |||||||| | || || | | |||||| ||| Sbjct 17905 GGTGATGCAGGTGCGTTCGGATCGCGCCAACCATGCCGGCGTGTTTCTCGGCGCGCAGCC 17964 Query 15686 GAATCACG------CGGGCGTGTATCTCGGTGACGG--GCAATTCCTGCACCACATGCAC 15737 | || ||| | ||| || || || | | || | | ||||||||| || | Sbjct 17965 GTTGGGCGAGGCGCCGGACCTGTTTC-CGCTGCCCGACGCGA-TGCTGCACCACCTGTAT 18022 Query 15738 GGGCGTCTGTCGACGCGCGCGGTGTGGGGCGGAATGTGGGCCGACAGCTGCAC-GACGGT 15796 ||||| || ||| | |||| |||||| | ||| ||| ||| | | | ||| Sbjct 18023 GGGCGCGACTCCGAGCGGGTCGTGTATGGCGGATTCTGGCGCGA-AGCCACCCGGGTGGT 18081 Query 15797 GCTGCGCTACGTGGGAGACAGGAAGTGAGCGAGACGCTTCGCATGATAAGGCTGTACGGC 15856 ||||||| | ||||| | || ||| ||| | | || || | | || |||||| Sbjct 18082 GCTGCGCCA---TGGAGAAAAGACATGAACGACAGGACACGAGTGGTCCGACTCTACGGC 18138 Query 15857 ACGCTCGGCGTGCGTTTCGGACGCATTCACCGCCTTGCCGT--CTCGTCGACCGCAGAGG 15914 ||| |||| ||| ||||| || ||||| || ||||| | ||| | || |||| Sbjct 18139 TGGCTGGGCGCGCGCTTCGGCCGTGAACACCGTCTGGCCGTGGCCAGTC--CGGCCGAGG 18196 Query 15915 CGGTGCGCGCGCTATCGGTGCTGATTCCCGGCTT---TCCGGCGTTCCTGACGTCGGCGC 15971 ||||||| ||||| | | ||| | || ||||| | ||| || || | ||| Sbjct 18197 CGGTGCGGGCGCTGTGCGCCCTGTTGCCGGGCTTCGAACGCGCGCTCGCGA--ACAGCGA 18254 Query 15972 GCGACGCCGGCCTCACGTTCGCCGTGTTCAACGGCCGGCGCAATCTTGACGAGGACGAGC 16031 || ||| ||| | |||||| ||| |||||| |||||||| || ||||| Sbjct 18255 GCAACG-GGGCGTGCGCTTCGCCTGCTTCGCCGGCCGCCGCAATCTGTCGGAAGACGAAT 18313 Query 16032 TCGAGCATCCGGTCGGGCGC-GACGAGATCCGCATTGCGCCGGTAATCGTCGGCAGTAAG 16090 | | ||||||||| |||||| |||| |||||||| |||||||| | | ||| ||| Sbjct 18314 TGGGGCATCCGGT-GGGCGCGGACGCCATCCGCATCGCGCCGGTGCTGGCGGGCGCCAAG 18372 Query 16091 CGCGGGGGGCTCTTCAACACGATTCTCGGCGCCGCACTCGTTGC--CGTTGGCG-----C 16143 ||| || || ||| | ||| | || || || | || | || || |||| | Sbjct 18373 AACGGCGGCCTGTTCCAGACGGTGCTGGGGGCGGTGCTGATCGCCGCGGCGGCGTTCTAC 18432 Query 16144 GGTGGCGACGT-TCGGTTTCGCGCAGCCGTGGGGCACATCGCTGATG----GG----GCT 16194 | |||| | | ||| || || | | |||| ||| | | | | || ||| Sbjct 18433 AGCGGCGGCCTGACGGCGGCGTTCA-CGGCGGGGGGCATGGTTCAGGCCACGGCCACGCT 18491 Query 16195 CGGCGCGTCGATGGCGCTGGGCGGCATCGTGCAGATGCTCAGTCCGCAACAGGCCGGC-- 16252 ||| ||||||| |||||||||| ||| ||||||||| ||||| ||| |||| Sbjct 18492 GGGCCTGTCGATGATGCTGGGCGGCGTCGCGCAGATGCTGTCGCCGCAGCAG--CGGCTG 18549 Query 16253 CTC-GCG---GGGAC--GGCGAACAACGGCACGTCGTACTACTTCAACGGACCCGTGAAC 16306 ||| ||| ||||| | || | |||||| | || ||| |||||||||| ||||| ||| Sbjct 18550 CTCAGCGCCAGGGACCGGCCGGAGAACGGCGCCTCCTACAACTTCAACGGGCCCGTCAAC 18609 Query 16307 AGCGCTGCGCAGGGCGAGCCGGTGCCGCTCGTCATCGGCGAAATGGTCGTCGGC-TCG-A 16364 | | || |||||| | || |||||||| | ||| |||||| |||||||| || Sbjct 18610 ACGACGGCACAGGGCAATCCCGTGCCGCTGCTGTACGGGGAAATGTTCGTCGGCAGCGCC 18669 Query 16365 AGGTGGTCAGTTCGGGAATCTATGCGGAGGATCAGGTTTGAA 16406 | | || | |||| |||||| |||| || ||||| |||| Sbjct 18670 ACGATCTCCG--CGGGCATCTATTCGGAAGACCAGGTATGAA 18709 Score = 98.7 bits (108), Expect = 3e-16 Identities = 138/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 16176 GCACATCGCTGATGGGGCTCGGCGCGTCGATGGCGCTGGGCGGCATCGTGCAGATGCTCA 16235 |||| ||||||||| | ||| | | ||| ||||||||||| | |||||| |||||| Sbjct 23286 GCACCTCGCTGATGACCATGGGCCTGGCCATGACGCTGGGCGGCGTGGTGCAGTTGCTCA 23345 Query 16236 GTCC---GCAACAGGCCGGCCTCG-CGGGGACGG--CGAACAACGGCACGTCGTACTACT 16289 || ||||| |||| || | |||||| | |||||||| |||||||| ||| Sbjct 23346 CGCCGCAGCAACGGGCCCTGAGCGTCAAGGACGGGCCCGACAACGGCGCGTCGTACAACT 23405 Query 16290 TCAACGGACCCGTGAACAGCGCTGCGCAGGGCGAGCCGGTGCCGCTCGTCATCGGCGAAA 16349 ||||||| || || |||| | | ||||||||| | || |||||| | | ||||| | Sbjct 23406 TCAACGGCCCGGTCAACACCACGGCGCAGGGCAACCCCGTGCCGGTGTTGTATGGCGAGA 23465 Query 16350 TGGTCGTCGGC 16360 || |||| ||| Sbjct 23466 TGTTCGTGGGC 23476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175429734675426