Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_005342.2 Length=48024 Score E Sequences producing significant alignments: (Bits) Value seq75 109 2e-19 >seq75 Length=46716 Score = 109 bits (120), Expect = 2e-19 Identities = 195/283 (69%), Gaps = 4/283 (1%) Strand=Plus/Minus Query 7839 CCGGCCATTTCCAGCTCGCGCTCGCCCCATCGCGTCCACGTCTGGAAGAAGTACGACTGG 7898 || ||||| |||||||||||||| |||||| |||| || ||| || |||||||||| Sbjct 19509 CCTGCCATGTCCAGCTCGCGCTCACCCCATTCCGTCATGGTTTGGTAGTGGTACGACTGG 19450 Query 7899 CGTTGCGGGTAGTTGATATTCGCGCCGCTGTCGCCGTCGGACGAGTAGTCGCCATACGTG 7958 || |||||| ||||| | ||||||||| | ||||| | | ||||||| || | Sbjct 19449 CGCTGCGGGAAGTTGGTGTTCGCGCCGGCGCGGCCGTTGTTGTTGAAGTCGCCGTAGGAC 19390 Query 7959 GCAACCTTCGTCGTCGGCTCTGCGGTGATGAACGCCGCGACCAGCGTCGTCCAGTCGCCT 8018 | || | ||| | || | ||| | ||| |||||| ||||||||||| Sbjct 19389 GACACTTCACCCGTGGATTCCACCACCGGGAAGGTTGCGGTCAGCGTGGTCCAGTCGCCC 19330 Query 8019 TTCTTCGACTCGCCGACGAGCTCGGCGGCCTTCATCGGGGCGACG--AGGATGTCGATAA 8076 ||||||| ||||| | || | ||||| ||| ||| ||||| || || | | | | Sbjct 19329 TTCTTCGCTTCGCCCAGGATCACGGCGCCCTGCAT--GGGCGTCGTCAGAACGCGCACCA 19272 Query 8077 CCGCCGGGTCGACGTAGGTCGTCAGGTAGTTCGGGATGCCCGA 8119 | || ||||| ||| || || |||| |||| |||||||| Sbjct 19271 GTTCGGGATCGACATAGTTCAGCATGTAGCTCGGAATGCCCGA 19229 Score = 107 bits (118), Expect = 6e-19 Identities = 351/534 (66%), Gaps = 21/534 (4%) Strand=Plus/Minus Query 12744 GCACGTAGTCGTACCAGACGCGAATCTCGCCTTC-GCTCGATGCGTTCAAGCCGGTCGGC 12802 ||| || |||||| ||||||| || || || || ||| | ||||||| |||| | ||| Sbjct 15515 GCATGTCGTCGTAGAAGACGCGGATTTCACCGTCCGCT-GTGGCGTTCAGGCCGCTGGGC 15457 Query 12803 GTGATACCGAGCAGCTTGATCAGCGGAATGTGCGAGACGGCGCTCATCTGCTCCTGGGCC 12862 | || || | |||||||| |||||| ||| || ||| | || |||||| ||| | Sbjct 15456 GAAATGCCCATCAGCTTGACCAGCGGGATGCCGGACACGACAGACAATTGCTCCAGGGAC 15397 Query 12863 TGGGCCTGCAGTGCGTCGAGCCCGGATAGCGGCGTGTT---GAACTGGAAGAATTCTTCC 12919 ||| ||| || || || || ||||| |||||| || |||| ||||| || || Sbjct 15396 TGGTTCTGTAGCGCATCCAGGCCGGACAGCGGCACATTCTCGAACCGGAAG---TCCTCG 15340 Query 12920 GTCGCCTTGTCGA--GGAAAAGAATGTTCCGGTTGTCGCGATAGCGGTTGATCAGCTCGG 12977 || ||||||||| | | | | |||||| || |||||||| ||| ||| Sbjct 15339 CTCTCCTTGTCGATCGCCCACGC--GCCGCGGTTGGTCCGCATGCGGTTGAACAGGTCGA 15282 Query 12978 CGCGCATCGACAA-ATCGACGTTCG---CGCCGGGCATCAACGCCTGCGCGAGGTCCATC 13033 |||| ||| || |||| | || ||||| || | || || | || | | Sbjct 15281 CGCGGC-CGAAAACATCGGTGCCCGGATCGCCGCCCAGGATCGAA---GCCATGTTCGTG 15226 Query 13034 AAGATGCCCGACACGCTGAACTGCTTGACGATGTCCGACACCGACTGGCGTGTGCGCAGC 13093 || || ||| ||| | || | || || ||| | |||||| || |||| Sbjct 15225 CTGAACAGCGGGACGGAGAAGCCATCGATCAGGTTCGCCACGGCCTGGCGCGTCTTCAGC 15166 Query 13094 CAGTTGTCGATGTACGGCATCGCGAGCTGCGTCATGCTGATGCCGGCGAACGAATACGTC 13153 ||||||| || |||||| ||||| ||||||||||| |||||| |||| |||| Sbjct 15165 CAGTTGTTGACGTACGGGATCGCCAGCTGCGTCATCGACATGCCGCCGAAGTTGTACGAA 15106 Query 13154 GGCTTGAGCATGTCGCCGACCGGGCGCGATACGATCGTGTGCAGGCGCGTCGCGTGGACT 13213 | ||| |||| ||| ||| |||||| ||||| | ||||||| | ||| || Sbjct 15105 GCCTTCAGCAGGTCCGGCACCTCGCGCGACACGATGCTCAGCAGGCGGCTGCTGTGCACC 15046 Query 13214 TCGGTGCCGATCATCCACCACGTCGAGGGTTTGTAGAAGT-CGTCCGCAACGGG 13266 | | || | || |||||| | ||| |||||||| | || ||||| |||| Sbjct 15045 TGGCGCCCCAGCACGAACCACGAGGTGGGCTTGTAGAAATCCGCCCGCATCGGG 14992 Score = 100 bits (110), Expect = 9e-17 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 7250 TTAGACGCCGATCAT-CTGCGCGACGGCGAACGGGCGGAAGATCACGGCGCCCCACGTGC 7308 ||| ||||||||||| ||| |||| ||| | ||| ||| |||||||||||||||| Sbjct 20110 TTACACGCCGATCATGCTG-GCGATGGCCATCGGAACCTTGATGACGGCGCCCCACGTGC 20052 Query 7309 CTGCCGACTTCTTCTGACGGAAGTACGACGAGTAACGCTCGATGGAGTGCGCACGCATCT 7368 | |||||||||||| |||| || | || || |||||| |||||| ||||||| Sbjct 20051 CCTGCGACTTCTTCTGCTTGAAGCTGGAGGTGTCGCGGACGATGGCGTGCGCGCGCATCT 19992 Query 7369 TTTCCGTAAAGCCGCAGGTCGCCGTGTCCTTGCCTTCGA-CGCGCGGCGCCCAGAGCTGC 7427 | || || ||| || ||| || || || |||||||| || | ||| ||||||| Sbjct 19991 TCTCGGTGAAGGCGGCGGTTCCCACGTTCTGGCCTTCGATCGAG-TCCGCGATGAGCTGC 19933 Query 7428 ACGAGACGGCCCGACGCCGTGTCGTA 7453 || || | ||||| ||||| |||| Sbjct 19932 ACCAGCTGACCCGAGCCCGTGGCGTA 19907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 153540614079468