Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2717 136 6e-28 seq56 123 4e-24 >seq2717 Length=6364 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||| || || |||||||| || ||||||||||| || || Sbjct 5980 CGCCAAGCGCCACCGCAAGGTTCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 5921 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || ||||||||| || || || |||| || |||| Sbjct 5920 CCGCCGTCTGGCCCGCCGTGGCGGTGTCAAGCGTATCAGCGGTCTGATCTACGAGGAGAC 5861 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | || ||| || ||| ||||| Sbjct 5860 CCGCGGCGTGCTCAAGGTGTTCCTTGAGAACGTGGTGCGCGACGCTGTCACCTACACCGA 5801 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || ||||| |||||| || | ||| ||||||| ||| | || || || || Sbjct 5800 GCACGCCCGCCGCAAGACCGTCACCGCCTTTGATGTCGTCTACGCACTCAAGCGCCAGGG 5741 Query 16672 CCG 16674 ||| Sbjct 5740 CCG 5738 >seq56 Length=53228 Score = 123 bits (136), Expect = 4e-24 Identities = 184/261 (70%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| ||| || || |||||||| || ||||||||||| || || Sbjct 183 CGCCAAGCGCCACCGCAAGGTTCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 242 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || ||||||||| || || || |||| || |||| Sbjct 243 CCGCCGTCTGGCCCGCCGTGGCGGTGTCAAGCGTATCAGCGGCCTGATCTACGAGGAGAC 302 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| | | ||| || | ||| ||||| Sbjct 303 CCGCGGCGTGCTCAAGGTGTTCCTTGAGAACGTGGTGCGTGACGCCGTTACCTACACCGA 362 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| |||||| || | || | ||||| || | || || || || Sbjct 363 GCACGCTCGCCGCAAGACCGTCACCGCCTTTGACGTTGTCTACGCGCTCAAGCGCCAGGG 422 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 423 CCGCACCCTCTACGGCTTTGG 443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79067886458307