Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq313 331 3e-86 >seq313 Length=28640 Score = 331 bits (366), Expect = 3e-86 Identities = 742/1097 (68%), Gaps = 22/1097 (2%) Strand=Plus/Minus Query 27139 CGGATACGGCCGCCGATGCGCCGCCCCGCCTTGCGCGGATCGGCAATAGCGATCAC-CTG 27197 ||||| |||||||||||||| || |||||| | || | ||||| | |||||| ||| Sbjct 20293 CGGATTCGGCCGCCGATGCGGCGGCCCGCCAGGTGCTGGTCGGCCACGCGGATCACGCTG 20234 Query 27198 CCCCGGACCGAC-CAGCACGCCGTCCATGCCGACCTGAAACGACACCGTTCCCGCCTCGT 27256 ||| || | || | ||| || |||| ||||||| |||| |||| | || ||| Sbjct 20233 CCC-GGCCGCACGCGGCAGGCA-TCCAGGCCGACCGAGAACGTGACCGAGCGCGTCTCCA 20176 Query 27257 ATCGCGACGTGAGCAAAATCCATTGGCCGACGCGATGTGCCTGCGCCTGCGACGTGCACC 27316 || || |||| ||||| | ||||| || || ||||| | |||| ||||| | Sbjct 20175 GGTTGGAGGTCAGCAGCATCCACTTGCCGATCCGGTGCGCCTGGCCGCGCGAGGTGCAGC 20116 Query 27317 CGAACGCAGTAACCTGCGTCTTAATG-ACGCCGTAGCGCGCGATCCCGTCTTCGTCCGGC 27375 ||||| | || || | || | | || | || ||||||||||| || || || | Sbjct 20115 CGAACCCGGTCACTT-CGACCTGCTGGATTCCATAGCGCGCGATGCCTTCGCGGTTCTCG 20057 Query 27376 ACGTATTCAACGG-CTTGCTTGTACTGGTTCGC-CGGGTCGTTATAGCTGACGAGCGCGA 27433 ||||| || || || || | | |||| | |||||| || || ||||| | Sbjct 20056 ACGTACTCGACCTTCTGGC--GACCCATTTCGGACATGTCGTTCCAGGACACCAGCGCCA 19999 Query 27434 CCGTGTACCGCGTCTTACGCTCGCTGCCGACATACCGGAACGAGCCATCGATCACGTTCG 27493 | ||||| ||||| | || | |||||| || ||| |||||||| |||||| | Sbjct 19998 CGGTGTAGCGCGTGGTCAGCGCCGAGCCGACGTAGTTGAAGCGGCCATCGACCACGTTGG 19939 Query 27494 CCGCCGTGTACACGTACACCGGATCTGACGGCATGTCCGCCGATGCGACGACAGCTCCCG 27553 ||| || | || ||| |||||||| ||||||||| ||||| |||| || || | Sbjct 19938 CCGACGAGAACGTGTAGACCGGATCGCCCGGCATGTCGGCCGAGGCGAACACGGCGGCGT 19879 Query 27554 GCCCCCAGTAGGCGATGCCGCGGAACACGCTCGCGATGTCCTGCAACACCTTGAACGCGT 27613 |||| || || ||||||||||| | | |||| |||||||| |||| | | |||| Sbjct 19878 TGGCCCAATAAGCCATGCCGCGGAAAATGGAGGCGAAGTCCTGCACCACCCGGTAGGCGT 19819 Query 27614 CGGCCGCCGACTGGATCACGCAGTTGCAGGCGAATCGCGGCTCGACGCCGCCTTTTCCGT 27673 |||||||| || | | |||||||| ||| ||||| || ||||| |||| Sbjct 19818 CGGCCGCCTGTTGCAGGTAGACGTTGCAGGTGAAGCGCGGTTCCTTTCCGCCGAAGCCGT 19759 Query 27674 CCGACACCATCACATCGCAGTAGCGCGCGATTTCGTACAGCCCCCACTTGTCGATCATCG 27733 | |||||| | ||||| ||||| |||| | |||||| ||||||||||| | | Sbjct 19758 CATCGACCATCTCGTCGCAATAGCGGCCGATCTGGTACAGGCCCCACTTGTCCAGCCAGC 19699 Query 27734 ATGCATCGACGGTCTTTCCGAGCCCGTAGCGCTCGTTCAACAGCAGGTCGTAGAAGATCC 27793 || ||| | | || || || ||||| ||||| | ||||||||||| | || Sbjct 19698 CCGCCGGCACGCGCGTGCCCAGGCCATAGCGGTCGTTGCTGATGAGGTCGTAGAACACCC 19639 Query 27794 ACGCGGGATTGTTCGTCCATGCCGGTTTGAACGTGCCGTCCCACGTGCCCGAGTACGTGC 27853 | || || ||||| ||||| ||| | ||||| |||||||||||| ||| || || Sbjct 19638 AGGCCGGGTTGTTGGTCCAGGCCAGCTTGAAGGTGCCGTCCCACACGCCGTCATAGCGGC 19579 Query 27854 GCGTCTCAGGATCGTAGTTCGACGGCACACGCACGATCAGACCTCGAACGTGGTACGAGC 27913 || || || | ||||| |||||||| || | ||| | || || |||||||||| || Sbjct 19578 GCAGGTCCGGGTGATAGTTGGACGGCACCCGGATGATGCGGCCGCGCACGTGGTACGCGC 19519 Query 27914 GCACCGGGACCTGCGAGAACGAGCG-CGCGTCGAACGTCATACCCACGAGCGCAGTCATC 27972 | || | | |||| ||| |||||||| | | || ||||| ||||| | |||| Sbjct 19518 GGGTGGGAATGCTCTGGAAC-TGCGACGCGTCGATCTTGATGCCCACCAGCGCCGACATC 19460 Query 27973 GGATAGCGCAGCTTGCGGTCGATGATTTCGGTGATCGCCTCGATGTTCACCGT---GTCG 28029 ||||||||||||||| ||||| ||| ||||||| || || | ||| || ||| Sbjct 19459 GGATAGCGCAGCTTGGCGTCGACGATCTCGGTGACCGTGTCCA---CCACGGTGCGGTCC 19403 Query 28030 GCGATCAGCGAGCTGTGCGCATTCGGCGTAATGCGCCGCACGCGCACCAGCCAGCCGGAT 28089 | ||| ||||| || || ||||| | ||| ||||||||||| |||||| Sbjct 19402 GAGATGGTGTTGCTGTTGGCGTTGGGCGTCACGCGGCGCACGCGCACGGTCCAGCCCTGG 19343 Query 28090 TTCGCACTCGGCAGCTCGATCCGATGGGAACGCTCGTACAGCG--ACGTCGTCTTGCCGT 28147 ||| | |||||||||||| || || || || |||| |||| || |||||||||| Sbjct 19342 CGCGCGCGCGGCAGCTCGATGCGGTGCGA--GCGCGTATAGCGCTGGGTGGTCTTGCCGT 19285 Query 28148 CAAAGGCGCCGCGCAGCACTTCCGCGTACGAGCCCCCGTCAACCGACAGGTCAATCGCAT 28207 | || ||| |||||| | ||| | | ||||| ||| || ||| | | Sbjct 19284 CGAACGCGGTCGACAGCACCGTCTGGTAGCCGGCGCCGTCGGTGTTCAGCTCGATCACGT 19225 Query 28208 ACTCGACTCGGTAGCCG 28224 | ||||| ||||||||| Sbjct 19224 ATTCGACGCGGTAGCCG 19208 Score = 96.9 bits (106), Expect = 1e-15 Identities = 164/232 (71%), Gaps = 7/232 (3%) Strand=Plus/Minus Query 29378 TGCATCAGCAGGACGTCGCCCGGTTCGAGCGCCACGTCGCGGCCGACGTCGA-GAAAACC 29436 ||||||| || ||||||||||| | ||||| | | ||||| | | | |||| || Sbjct 17913 TGCATCACCACCACGTCGCCCGGCGCCAGCGCTTCAT-GCGGCTGCAGCGGGCGAAAGCC 17855 Query 29437 GGCGTCCTGGTAGTGCGCGATGTACAGGTTCGAGTGGCCGTCAG---CCCACCAACCGTC 29493 || || |||||| | |||||||||| | || | ||| ||||||| || || Sbjct 17854 CGCCTCGGCGTAGTGATCCATGTACAGGTCGCCGGCGCGGCCAGGTTCCCACCAGCCATC 17795 Query 29494 CTTACGTTCGAAATCGGGCAGCGTGATCCCCCGCTCGGCGAG-ATACCAGTCGCGGATCA 29552 || || || || |||||| |||| || || ||| || | |||||||||||| | || Sbjct 17794 CTCGCGCGGAAAGTCCGGCAGCTTGATGCCGCGTTCG-CGCGCATACCAGTCGCGCACCA 17736 Query 29553 ACGCATAGCAGTCGAGCACGCCGTGCAGAAATTCGCGGCCATACAGCGGCGC 29604 || |||||| ||||||||||||||| || | ||| || | |||||||| Sbjct 17735 GCGAATAGCAATCGAGCACGCCGTGCGCGAACTGGCGCCCCAATAGCGGCGC 17684 Score = 89.7 bits (98), Expect = 1e-13 Identities = 119/166 (72%), Gaps = 12/166 (7%) Strand=Plus/Minus Query 28713 TCGCCGTAAATCAGCGGCACGGGCTCCCCCTGAGCCGCGCTGTTCACAGGCCCGTTGAAG 28772 || ||||| | |||||||||||| | ||||| |||| |||| || |||||||||||| Sbjct 18650 TCCCCGTACAGCAGCGGCACGGGATTGCCCTGTGCCGTCGTGTTGACGGGCCCGTTGAAG 18591 Query 28773 TAGTAGGACGTGCCGTT---------GTCAGTGACGCCAGCCAGGCCGGGCTGATGCGGG 28823 | |||||| | |||||| ||| || ||| ||| | |||| ||||| Sbjct 18590 TTGTAGGAGGCGCCGTTCTCCGGCCGGTCCCTGGCGCTGAGCAGCC---GCTGCTGCGGC 18534 Query 28824 CTCAACATTTGCGCGACACCGCCGAGCATCATCGAAGCGCCCATCG 28869 || ||| |||||||| ||||| ||||||||||| ||||| || Sbjct 18533 GACAGCATCTGCGCGACGCCGCCCAGCATCATCGACAGGCCCAGCG 18488 Score = 80.6 bits (88), Expect = 8e-11 Identities = 152/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 36488 CAGCTCGGCAAGCGTCCTGCCGAGCCGCAGCGCCAGTGTCATTTCGAGTCGGAGGTCGGG 36547 || |||| | ||||| | || || || |||||||| ||| || |||||||| || Sbjct 12012 CAACTCGCCCAGCGTGCGCCCCAGTCGAAGCGCCAGGACCATCAGGAAACGGAGGTCTGG 11953 Query 36548 -GTTTCGGCGGAAGGCTTTTTTCCGGCTTCCTCCCGGTCTGCGGCGAGGCCGCCGAGCTC 36606 ||||| ||| ||||||||| || |||| | | | ||||| ||| ||||| Sbjct 11952 CGTTTCCT-GGAGGGCTTTTTTGCGCGCTCCTGCGCCCCCTCCCCGAGGTTGCCCAGCTC 11894 Query 36607 GATCGCCTTCGTGACCACCCGATCGTGTGCCGGCCCGTACGCCTCGGCGACCGCTTGGGC 36666 ||||||||| | |||| | |||| ||| ||||||| ||| |||| || | | | | Sbjct 11893 GATCGCCTTGGCCACCAGCGTGGCGTGCGCCAGCCCGTAGGCCGCGGCCACGACGTCGAC 11834 Query 36667 ATCGCTGTCGCCGAATTCGCGACGCCACCCCTGGGCGGTCT 36707 || |||| |||| |||| ||| |||||| |||||| Sbjct 11833 GTCTTCGTCGTCGAAGACGCGGCGCGGCCCCTGTTCGGTCT 11793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143403977031084