Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq907 138 2e-27 seq1912 91.5 3e-13 seq1226 91.5 3e-13 >seq907 Length=16333 Score = 138 bits (152), Expect = 2e-27 Identities = 116/140 (83%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 42723 GTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGT 42781 || ||||||||||||||||| || ||||| ||||||||||||||||||| || || Sbjct 11230 GTGGAGGGCATCTTCTTCTCCGGGTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGA 11289 Query 42782 GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAG 42841 || |||||||| ||||| ||||| ||||| |||||||| |||||||||| ||||| | Sbjct 11290 CTC-ATGCCCGGCCTCACTTTCTCAAACGAGCTCATCAGTCGGGACGAGGGCCTGCACAC 11348 Query 42842 GGACTTTGCCTGCCTCCTGT 42861 |||||||||||||| |||| Sbjct 11349 AGACTTTGCCTGCCTGCTGT 11368 >seq1912 Length=9087 Score = 91.5 bits (100), Expect = 3e-13 Identities = 198/293 (68%), Gaps = 5/293 (2%) Strand=Plus/Minus Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGT 42544 |||||| ||| | ||||| ||| ||||| | |||||||| || || ||| || Sbjct 5236 AGAGGTTCAGATCCCAGAGGCACGCGCATTCTATGCCTTCCAGAGCGCGATGGAGGCGGT 5177 Query 42545 GCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAA 42604 ||| |||||||||| | ||||| | |||||| | ||| || | ||||| | Sbjct 5176 ACACAGCGAGGTGTACGGCCTGCTGCTGGAGCAGTACATTCGGGACCCTGAGGAGCGGGA 5117 Query 42605 CGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCT 42664 | |||||||| | || |||| || || || ||| | ||||||| || | ||||| | Sbjct 5116 CAGGCTGTTCCACGCGGTGGACACCATCCCTTGCGTGCAGAAGAAAGCAGCTTGGGCAAT 5057 Query 42665 CAACTGGATCGAGAGTCCCGACGCAACGTTCGGC-GAGAGGCTGGTAGCCTTTACCGCCG 42723 || ||||| ||||| | | || ||| || ||| | ||||| || | | || Sbjct 5056 GAAGTGGATAGAGAG--CAGCAGCT--GTTTTGCAGAGCGCCTGGTGGCGTACGCGTGCG 5001 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 | |||||||| |||||| || | ||| ||||||||||||||||| || Sbjct 5000 TGGAGGGCATACACTTCTCAGGATCTTTCTGTGCCATCTTCTGGCTCAAGAAG 4948 >seq1226 Length=13240 Score = 91.5 bits (100), Expect = 3e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 242838 CGGGGCGCCCTGATCATCCTGGAAGGCGTCGATCGTTCGGGTAAGTCGACGCAGTGTCGC 242897 ||||||||| | || | | || || | ||||| |||| ||| |||||||| | Sbjct 6765 CGGGGCGCCTTTATTGTGTTTGAGGGGGCGGATCGAGCGGGCAAGAGCACGCAGTGCCAG 6824 Query 242898 ATGCTGGTCAAGGCCCTGCTGGAGATGGGAGTCGAGGCCGAGCTGATGAGGTTCCCGGAC 242957 ||||| || || ||| || | ||||| | ||| ||| || | | ||||| ||| Sbjct 6825 ATGCTCGTGCAGCACCTTAAGGCGCAGGGAGCGGCGGCGGAGATGTGGCGCTTCCCCGAC 6884 Query 242958 AGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAA-CAAGAGCGATCTGGA 243016 | |||||| | ||||| | ||||||||||| ||||| | ||| ||||||| | || Sbjct 6885 CGCACCACTGCTATCGGCAAAATGATCAACTCCTACCT-CACAAGTCAGAGCGAGATCGA 6943 Query 243017 CGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGA 243058 ||| | || |||||||||||||| || ||||| ||||| Sbjct 6944 TGATGCAGCTGTGCACCTCCTGTTCTCAGCAAACCGCTGGGA 6985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944244777884240