Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq313 291 3e-74 >seq313 Length=28640 Score = 291 bits (322), Expect = 3e-74 Identities = 650/959 (68%), Gaps = 30/959 (3%) Strand=Plus/Plus Query 17543 GGACACGTCGAACGGCAATATCACGGGCTATCGCGTCGACTATGCGATCGACTTGTCGGT 17602 |||||| ||||||| | |||| ||||| |||||||| || | |||||| || Sbjct 19184 GGACACCAAGAACGGCGACATCAACGGCTACCGCGTCGAATACGTGATCGAGCTGAACAC 19243 Query 17603 CGACGGCGGGTCGTATGCGCAGGTGCTGGCCGGTGCGTTCGACGGCAAGACGACGTCGCT 17662 |||||||| || | ||||||| | ||||||||||||||||| || || Sbjct 19244 CGACGGCGCCGGCTACCAGACGGTGCTGTCGACCGCGTTCGACGGCAAGACCACCCAGCG 19303 Query 17663 CTATGAGCGCTCGCATCGGATCGAGCTGCCGCGCGCAAAAAATGGTTGGTTGATCCGCGT 17722 |||| ||||||||| || ||||||||||||||||| | || ||| | ||||| Sbjct 19304 CTATACGCGCTCGCACCGCATCGAGCTGCCGCGCGCGCGCCAGGGCTGGACCGTGCGCGT 19363 Query 17723 GCGCCGCATCACGCCGAACGCGCACACGGCGACGATCGCCGACGCGATCAACATCGAGG- 17781 ||||||| | ||||| ||||| ||| || ||| | ||| || || | | | || Sbjct 19364 GCGCCGCGTGACGCCCAACGCCAACAGCAACACCATCTCGGAC-CG--CACCGTGGTGGA 19420 Query 17782 --CGATTACCGAGATCATCGATCGGAAGCTCCGCTATCCGATGACGGCGCTTGTCGGTAT 17839 || | ||||||||| |||| ||||| |||||||||||| ||||||| || || || Sbjct 19421 CACGGTCACCGAGATCGTCGACGCCAAGCTGCGCTATCCGATGTCGGCGCTGGTGGGCAT 19480 Query 17840 GACGTTCGACGCACGTTCGTTCTCGAGCGTGCCAGTGCGTTCGTATCACGTGCGAGGGAT 17899 | | ||||||| |||| |||| | || || |||| |||||||| || Sbjct 19481 CAAGATCGACGCGTCGCAGTTCCAGAGCATTCCCACCCGCGCGTACCACGTGCGCGGCCG 19540 Query 17900 GATCTTCCGAGTCCCGACAAACTACGACCCGGAGACGCGTACGTACTCGGGTACATGGGA 17959 ||| |||| || ||| | ||||| ||||||| ||| || || ||||| Sbjct 19541 CATCATCCGGGTGCCGTCCAACTATCACCCGGACCTGCGCCGCTATGACGGCGTGTGGGA 19600 Query 17960 CGGTACGTTCAAGGCAGCATGGACGAACAATCCGGCGTGGGTCTACTACGGCCTACTTCT 18019 ||| || |||||| || ||||| ||||| ||||| ||||| | ||||| ||| | Sbjct 19601 CGGCACCTTCAAGCTGGCCTGGACCAACAACCCGGCCTGGGTGTTCTACGACCTCATCAG 19660 Query 18020 CGACAAGCTCAACGGATTGGG--TGACCGTGTCGATGCTTCGATGG-TCGATAAGTGGGC 18076 | || | | | | || |||| | |||| || || | ||| | || ||||||| Sbjct 19661 CAACGACCGCTATGGCCTGGGCACGCGCGTGCCG--GC-GGGCTGGCTGGACAAGTGGGG 19717 Query 18077 GCTGTACGCAATCGCGCGTTACTGCGACGAACTCGTGTCCGACGGGAAGGGCGGCAAGGA 18136 |||||| |||| || || |||||||| | || ||||| ||||| ||||| Sbjct 19718 CCTGTACCAGATCGGCCGCTATTGCGACGAGATGGTCGATGACGGCTTCGGCGGAAAGGA 19777 Query 18137 GCCGCGCTTCACCTGCAA---CTGCGTGCTTCAGACGCGCGCGGACGCATTCAAGGTGGT 18193 ||||||||||||||||| || | ||| ||| || || ||||| | | |||||| Sbjct 19778 ACCGCGCTTCACCTGCAACGTCTACCTGCAACAGGCG---GCCGACGCCTACCGGGTGGT 19834 Query 18194 ACAGGATCTCGCGAGCGTCTTTCGCGGCATTTCGTACTGGGGCGCCGGGTCGGTGGTCGC 18253 ||||| |||| | | || |||||||| | || |||| | || | ||| |||| Sbjct 19835 GCAGGACTTCGCCTCCATTTTCCGCGGCATGGCTTATTGGGCCAACGCCGCCGTGTTCGC 19894 Query 18254 GTCGGCCGATATGCCGTCCGATCCGGTCTACCTGTACACGGCCGCGAATGTCGTCGGTGG 18313 |||||||| |||||| ||||||||||||| || | || | || || || |||| ||| Sbjct 19895 CTCGGCCGACATGCCGGGCGATCCGGTCTACACGTTCTCGTCGGCCAACGTGGTCGATGG 19954 Query 18314 TTCATTCAAGTACGTCGGCAGCGAACGCAAGACGCGTTACACGGTCGCGCTCGTCAGCTA 18373 ||||| ||||||||| | | | ||||| ||||| || ||||| || || Sbjct 19955 CCGCTTCAACTACGTCGGCTCGGCGCTGACCACGCGCTACACCGTGGCGCTGGTGTCCTG 20014 Query 18374 CAACGA----TCCGACGAACCAGT-ACAAGCAAGCTGTCGAGCCCGTGCAGGACGACGAC 18428 ||||| ||||| || || | || ||| |||||| ||| || || ||| Sbjct 20015 GAACGACATGTCCGA--AATGGGTCGCCAG-AAG--GTCGAGTACGTCGAGAACCGCGAA 20069 Query 18429 GGGATCGCGCGATATGGCGT-CATCAAGACGGAGGTCACGGCGTTCGGCTGCACGTCGC 18486 || |||||||| ||||| | || || | | || || || | |||||||||||| |||| Sbjct 20070 GGCATCGCGCGCTATGGAATCCAGCAGGTC-GAAGTGACCGGGTTCGGCTGCACCTCGC 20127 Score = 136 bits (150), Expect = 1e-27 Identities = 401/594 (68%), Gaps = 47/594 (8%) Strand=Plus/Plus Query 16576 CTGTACGGCACGCTCGGCGTGCGTTTCGGACGCATTCACCGCCTTGCCGTCTC--GTCGA 16633 || |||||| ||| |||| ||| ||||| || ||||| || ||||| | ||| Sbjct 18130 CTCTACGGCTGGCTGGGCGCGCGCTTCGGCCGTGAACACCGTCTGGCCGTGGCCAGTC-- 18187 Query 16634 CCGCGGAGGCGGTGCGGGCGTTGTCGGTGCTGATTCCCGGCTTC---CGGGCGTTCCTGA 16690 | || ||||||||||||||| ||| | ||| | || |||||| || ||| || || Sbjct 18188 CGGCCGAGGCGGTGCGGGCGCTGTGCGCCCTGTTGCCGGGCTTCGAACGCGCGCTCGCGA 18247 Query 16691 CTTCGTCGCGCGACGCCGGCCTGACGTTCGCCGTGTTCAACGGCACGCGCAATCTCGACG 16750 | || || ||| ||| || |||||| ||| |||| |||||||| | Sbjct 18248 --ACAGCGAGCAACG-GGGCGTGCGCTTCGCCTGCTTCGCCGGCCGCCGCAATCTGTCGG 18304 Query 16751 AGGACGAGCTTGAGCACCCGGTCGGGCGC-GACGAGATCCGCATTGCGCCGGTGATCGTC 16809 | ||||| | | ||| ||||| |||||| |||| |||||||| ||||||||| | | Sbjct 18305 AAGACGAATTGGGGCATCCGGT-GGGCGCGGACGCCATCCGCATCGCGCCGGTGCTGGCG 18363 Query 16810 GGCAGCAAGCGCGGCGGGCTCTTCAATACGATTCTCGGCGCCGCAC---TCGCCGCGGTT 16866 ||| |||| |||||| || ||| | ||| | || || || | | ||||||||| Sbjct 18364 GGCGCCAAGAACGGCGGCCTGTTCCAGACGGTGCTGGGGGCGGTGCTGATCGCCGCGG-C 18422 Query 16867 GGCG-----CGGTCGCGACGT-TCGGTTTCGCGCA-GCCGTGGGGCACGTCGCTGATG-- 16917 |||| | | ||| | | ||| || || | || |||||| | | | | | Sbjct 18423 GGCGTTCTACAGCGGCGGCCTGACGGCGGCGTTCACGGCGGGGGGCA--TGGTTCAGGCC 18480 Query 16918 --GGGCTCG--GGGC--GTCGATGGCGCTGGGCGGCATCGTGCAGATGCTCAGCCTGCAG 16971 || | || |||| ||||||| |||||||||| ||| ||||||||| | |||| Sbjct 18481 ACGGCCACGCTGGGCCTGTCGATGATGCTGGGCGGCGTCGCGCAGATGCTGTCGCCGCAG 18540 Query 16972 CAGGCCGGC--CTC-GC----GGGCGCGGCC-AACAACGGCACGTCGTACTACTTCAACG 17023 ||| |||| ||| || ||| ||||| | |||||| | || ||| ||||||||| Sbjct 18541 CAG--CGGCTGCTCAGCGCCAGGGACCGGCCGGAGAACGGCGCCTCCTACAACTTCAACG 18598 Query 17024 GACCCGTGAACAGCGCCGCACAGGGTGAGCCGGTGCCGCTCGTTATTGGGGAAATGATCG 17083 | ||||| |||| | |||||||| | || |||||||| | ||||||||| ||| Sbjct 18599 GGCCCGTCAACACGACGGCACAGGGCAATCCCGTGCCGCTGCTGTACGGGGAAATGTTCG 18658 Query 17084 TCGGC-TCG-AAGGTGGTCAGTTCCGGGATCTATGCGGAGGATCAGGTTTGAAA 17135 ||||| || | | || | | || |||||| |||| || ||||| ||||| Sbjct 18659 TCGGCAGCGCCACGATCTCCG--CGGGCATCTATTCGGAAGACCAGGTATGAAA 18710 Score = 105 bits (116), Expect = 2e-18 Identities = 367/558 (66%), Gaps = 31/558 (6%) Strand=Plus/Plus Query 15847 GTATCCGCGCGAGTGCTGCGGGTTGGTCGTGAAGACGG--CGATCGGCGAGACGTACGTG 15904 |||||||| || |||||||| |||| || ||| ||| ||| |||| ||| ||| Sbjct 17374 GTATCCGCAGGAATGCTGCGGCCTGGTGGTCAAGGCGGGCCGAC--GCGAATGGTATGTG 17431 Query 15905 CCCTGCCGAAACCTCGCAGGCGCGCCGACG--GACCAATTCGCGCTCGCATCCGAGGACT 15962 || ||||| ||| ||| |||| || || || |||| | | | |||||| Sbjct 17432 CCGTGCCGCAACACCGC-----CGCCAGCGAAGAGCACTTCGTCATGTCGGCGCAGGACT 17486 Query 15963 ACGCCGCCGCGGAAGATGCTGGCGAGATCGTCGCTCTCGTGCATTCGCATCCGGGGGCGT 16022 |||| || || || || ||| |||| || | ||||| ||||| |||| ||| Sbjct 17487 ACGCGGCGGCCGAGGAAAGCGGCCGGATCACGGCCGTGGTGCACTCGCACCCGGACGCGA 17546 Query 16023 TGGCGCAGCCGAGCGAAGCGGATCGCGCGATGTGCGAGCGCAGCGGCATCGCGAAGTGGG 16082 ||||| ||| |||||||| ||||| | | |||||| |||| | | ||| Sbjct 17547 CGGCGCTGCCCAGCGAAGCCGATCGGGTGGCCTGCGAGGCGTCCGGCCTGCCC---TGGT 17603 Query 16083 TGATCGTGTCGCTCGGCGTGCAGGCC---GACGGATCGATCGGCGTCGACGACTGGTGCG 16139 ||||| ||| || | ||| | ||||| |||| | | ||| ||| Sbjct 17604 ACATCGT--CGC-CGTGGCCAAGGACCTGGACGGCAGGATCAAGGCTGGCGAGATCCGCG 17660 Query 16140 AGTTCAAGCCGGCCGGCTACGTCGCGCGGCTGATCGGCCGCCAGTTCGTACATGGCGTGC 16199 |||| ||||| |||| | |||| ||| | || |||||||||| || ||||||| Sbjct 17661 GCTTCACGCCGGAGGGCTTCCAGGCGCCGCTATTGGGGCGCCAGTTCGCGCACGGCGTGC 17720 Query 16200 ACGACTGCTACGCGATCGTGCGCGACTGGTAT-CTCGCCGAGCGCGGCATTTCGCTACCC 16258 ||| ||||| || | ||||||||||||||| | || ||| |||||||| ||| || Sbjct 17721 TCGATTGCTATTCGCTGGTGCGCGACTGGTATGCGCG-CGAACGCGGCATCAAGCTGCCG 17779 Query 16259 GACTTCGAGCGCGAGGACGAGTGGT-GGAAC---GACGGTCGGTCGAACCTCTACCTCAA 16314 ||||| ||||||||| | |||| ||||| | || | | || |||| ||| | | Sbjct 17780 GACTTTCCGCGCGAGGATGGCTGGTGGGAACCTGGCCGCGCCGGCG-ACCTGTACATGGA 17838 Query 16315 CCACTATCAGGACGCAGGCTTTCTCGACGTCGGCCGCGACGTGA--CGTTGCAGGTCGGC 16372 ||||| || || ||||| ||| | | || || | ||| || || | ||| Sbjct 17839 TCACTACGCCGAGGCGGGCTT--TCGCCCGCTGCAGCCGCATGAAGCGCTGGCGCCGGGC 17896 Query 16373 GACGTGTTGCTGATGCAG 16390 |||||| || |||||||| Sbjct 17897 GACGTGGTGGTGATGCAG 17914 Score = 96.9 bits (106), Expect = 1e-15 Identities = 139/192 (72%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 16904 GCACGTCGCTGATGGGGCTCGGGGCGTCGATGGCGCTGGGCGGCATCGTGCAGATGCTCA 16963 |||| ||||||||| | || | | ||| ||||||||||| | |||||| |||||| Sbjct 23286 GCACCTCGCTGATGACCATGGGCCTGGCCATGACGCTGGGCGGCGTGGTGCAGTTGCTCA 23345 Query 16964 GCCTGCAGCA---GGCC---GGCCTCGCGGGCGCGGCCAACAACGGCACGTCGTACTACT 17017 | |||||| |||| || || || || | || |||||||| |||||||| ||| Sbjct 23346 CGCCGCAGCAACGGGCCCTGAGCGTCAAGGACGGGCCCGACAACGGCGCGTCGTACAACT 23405 Query 17018 TCAACGGACCCGTGAACAGCGCCGCACAGGGTGAGCCGGTGCCGCTCGTTAT-TGGGGAA 17076 ||||||| || || |||| | | || ||||| | || |||||| | ||| | ||| || Sbjct 23406 TCAACGGCCCGGTCAACACCACGGCGCAGGGCAACCCCGTGCCGGT-GTTGTATGGCGAG 23464 Query 17077 ATGATCGTCGGC 17088 ||| |||| ||| Sbjct 23465 ATGTTCGTGGGC 23476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155620416504168