Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1233 95.1 1e-14 seq1176 91.5 1e-13 seq7728 87.8 1e-12 seq585 87.8 1e-12 >seq1233 Length=13172 Score = 95.1 bits (104), Expect = 1e-14 Identities = 89/111 (80%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || |||||| ||| ||||| ||||||||||| | | Sbjct 13061 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAATC-GGC 13119 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTG 34010 || || || |||| |||| |||||||| ||||| |||||||||||||| Sbjct 13120 AAGGGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTG 13170 >seq1176 Length=13603 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || || ||| ||||||||| |||||||| || ||| Sbjct 12495 CCGCCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 12554 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| |||||||| ||||| |||||||||||||| || || Sbjct 12555 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGGA 12614 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 12615 ATGCCCTCCTTGTCC 12629 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || || ||| ||||||||| |||||||| || ||| Sbjct 13254 CCGCCGCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 13313 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| |||||||| ||||| |||||||||||||| || || Sbjct 13314 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGGG 13373 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 13374 ATGCCCTCCTTGTCC 13388 >seq7728 Length=1087 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||| ||| ||||| ||||| || | ||| |||||||||||||||||| || | Sbjct 274 CCGCCTCGCAGGCGCAGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCCGA- 216 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || || |||| |||| |||||||| ||||| || |||||||||||||| || Sbjct 215 AAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCAGGGGG 156 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTT 34049 | | || |||||| || |||||||| Sbjct 155 GATCCCTTCCTTGTCCTGGATCTTTTGCTT 126 >seq585 Length=20866 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || || ||| ||||||||| |||||||| || ||| Sbjct 671 CCACCGCGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCC 730 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || | || |||| |||||||| ||||| |||||||||||||| || Sbjct 731 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTC 783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397023691255198