Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq44 255 3e-63 >seq44 Length=56345 Score = 255 bits (282), Expect = 3e-63 Identities = 578/861 (67%), Gaps = 11/861 (1%) Strand=Plus/Plus Query 59889 GGATTGCCTCGGTTAGCTGCATCATCGAACATAAGGTAAGGATAGCCAGACTCAAACTGA 59948 || ||| | ||||| | | || |||||||| | ||| || ||||| ||||| ||||| Sbjct 4773 GGGTTGGCCCGGTTCACCGTGTCCTCGAACATGATGTAGGGGTAGCCCGACTCGAACTGG 4832 Query 59949 ACCTCTGCGATGGTCTGGAACAGCTTTCGAGCGTCGATAAAGGTCTTAGCGATCCTATCA 60008 | ||| |||| ||||||||| | || || |||| ||| | ||| ||| | Sbjct 4833 ATCTCCGCGAGGGTCTGGAAGAACTCGCGGGCGTTGATCTTCGACTTCTTGATACGCGGG 4892 Query 60009 TCTTTTAGCCACGTGTCGTACATCTCGGTTACGGAGAACTCGGACAGTGACTTTCCGTAC 60068 || | | | | | |||| | ||| | || |||| || | | | ||||| Sbjct 4893 TCGTCGACCATCTCGCGGTACTTGTCGCTGACCGAGATGTCACCGAACGGCACACCGTAG 4952 Query 60069 ACCTTATTGATGTCATAAGGAGAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGCGG 60128 || | || ||| || || ||||| ||| ||| |||| | |||||| || | Sbjct 4953 ACGCGCTCGACGTCGTACGGCGAGAAGAGGTACATGTCCTCGTCGTTCTTGGCGAGCTCG 5012 Query 60129 AACGTGACATCAGGAACGATAACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTCG 60188 ||||||| ||||| |||| || || || || || ||||| || ||||||||||||||| Sbjct 5013 AACGTGATGTCAGGCACGACGACACCGAGCGACAGCGTCTTGATGCGGATCTTCTCGTCG 5072 Query 60189 GCGTTTTCACGCTTGGTATCCAGGAACGCAAGGATGTCGGGGTGGTGTGCGTTCAAATAT 60248 ||||| || |||||||| || |||||| | ||||||||||||||| || | || Sbjct 5073 GCGTTCTCGCGCTTGGTGTCGAGGAACTTCATGATGTCGGGGTGGTGCGCCGAGAGGTAC 5132 Query 60249 ACCGCCCCTGCGCCCTGCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAGA 60308 || || || || ||||| | |||||||| ||||| | |||| |||||| ||||| || Sbjct 5133 ACGGCACCCGCACCCTGACGCGCACCCAGCTGGTTCGCGTAGCTGAAGCTGTCTTCGAGG 5192 Query 60309 ATCTTCATCACAGGGATGACTCCAGAGGCCTGACCTTCTCGACC--CTTAATCGGAGCTC 60366 | |||||| || ||||||| || || ||| ||||||| | ||| ||||| || | Sbjct 5193 AGCTTCATGACGGGGATGATGCCGCTGGACTG--GTTCTCGATCTGCTTGATCGGGGCGC 5250 Query 60367 CTGCCTCGCGGAGGTTGGAGAATCCAATGCCGACTCCGCCACCACGCTTAGACAGCTGGA 60426 | |||||||||| ||| || | | |||| ||||| || ||||| |||||| | Sbjct 5251 CGGCCTCGCGGATGTTCGACAGCAGCAGCGCGACGCCGCCGCCGCGCTTGCTCAGCTGCA 5310 Query 60427 GAGAGTCCTGAACGATTCGACCGATGGACCCCATGGTGTCCTGAACATCGAGGATGAAGC 60486 | | | | | | || |||| ||| ||||| |||||| | || | ||||| Sbjct 5311 GCGCGGAGTTGATGCCGCGGGCGATCGACTCCATGTTGTCCTCGATGCGCAGCAGGAAGC 5370 Query 60487 ATGATACTGGCTTGCCTGCG-TCGAGAAGCCCCGCGTTGAGGAAGGTCGGAGTTGCAGGC 60545 | || || ||| ||| ||| | | || | ||||||||||||||| || || ||| Sbjct 5371 ACGAGACGAGCTCGCC-GCGCTGGGCCTTGCCGGTGTTGAGGAAGGTCGGCGTGGCGGGC 5429 Query 60546 TGGAAGATTCCCTTGATAATGAGATCCACAAGGGACTCAGC---GTGCTCGAAGTCTTCG 60602 |||||| ||| ||| || ||||| ||| | || || || | | | ||| Sbjct 5430 TGGAAGCGACCCGAGATGATCTCGTCCACGAGGTTGTTCGCCAGGTCCTGGTCGCCGTCG 5489 Query 60603 CTGTAGT-GGATGGCCGTGAGTACCACTCGATCTTCGTAGCGCTCGTAATAGCGCTTGCC 60661 | ||| || ||| || | || || || || ||| |||||||| ||||||||||| Sbjct 5490 GCG-AGTCCGAGGGCGGTCATGACGACACGGTCCTCGAAGCGCTCGAGGTAGCGCTTGCC 5548 Query 60662 ATCGTTAGTCTTCAAGGCGTAGGAGTTATAGAACTTCAGCGCTCCCATGTAGGTCTTGAA 60721 ||| ||||||| | |||| | ||| |||| | ||| || | | |||| | ||| Sbjct 5549 GTCGAACGTCTTCAGCGTGTAGCTCGTGTAGTACTTGAACGCACCGAGGAAGGTGTCGAA 5608 Query 60722 GCGGAACTTGTGTCCGTAGGC 60742 |||||||| | ||||| || Sbjct 5609 CCGGAACTTCTTGCCGTACGC 5629 Score = 127 bits (140), Expect = 9e-25 Identities = 249/364 (68%), Gaps = 8/364 (2%) Strand=Plus/Plus Query 58452 CGGATGTAGTACAGAGACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAATG 58511 ||||||||||| | | ||| | ||||||||| |||||||||||||| ||| ||| Sbjct 3825 CGGATGTAGTAGATGGTCTTGATGCCCTTCTTCCACGCGTAGATCTGCGCCTTGTTGATG 3884 Query 58512 TCTCGCGTTGTCGCTGTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTACCCAA 58571 || ||||| || || || || |||||||||||| || || | |||||||| || Sbjct 3885 TCGCGCGTGGTGGCGGTGTCCTTGAAGAACAGCGTCAGCGAGAGCCCCTGGTCGACGTGC 3944 Query 58572 GGAGATGCTACAGCGTACATATCAATGATCGGGT--TAGGTCCGATAGCGTAAGCG--CT 58627 | | || | |||||| | || |||| | | ||| ||||| |||| ||| || Sbjct 3945 TGCGTGGCGGCGGCGTACGTGTCGATGACCTTCTCGTAG--CCGATCTCGTAGGCGTCCT 4002 Query 58628 ATCAATTGATTCTACATTCTCATTGGTCACTCCGTACTGAGGGTAATAGACTCGACCAAG 58687 | | | || | ||||| || | || | ||||| || || || || || Sbjct 4003 GGTAGT--ACTCGAGGTTCTCGTTCGACATGAAGGGTGCCGGGTAGTACACGCGCCCGAG 4060 Query 58688 CTTACCCTCCTTGCGAACCTCAACAGGAGAGGTCACAGGGTGAATCGAGGCCGTGGCATG 58747 ||| ||||||||||| | ||| | |||| | ||||| ||||| | ||| | | Sbjct 4061 CTTGCCCTCCTTGCGGATCTCGATCTTCGAGGCGATCGGGTGGATCGACGACGTCGAGTT 4120 Query 58748 GTTAATGTACGAGATAGAGCCGGTTGGTGGGATCGCCTGGAGGTTCTGGTTGTAAATACC 58807 ||| ||||||||||| || ||||| || || | ||||| |||||||||||||| || || Sbjct 4121 GTTGATGTACGAGATCGATCCGGTCGGCGGCACGGCCTGCAGGTTCTGGTTGTAGATGCC 4180 Query 58808 ATGC 58811 ||| Sbjct 4181 GTGC 4184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225705994271060