Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq706 390 5e-104 seq240 318 3e-82 seq5 102 4e-17 >seq706 Length=18769 Score = 390 bits (432), Expect = 5e-104 Identities = 612/866 (71%), Gaps = 15/866 (2%) Strand=Plus/Plus Query 65912 CATTCCCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGG 65971 ||| |||||||| || || || || |||| ||| |||||| |||| || ||| | || Sbjct 13755 CATCCCCACCGGTTCCATCGCCCTCGACGTCGCCCTCGGCGTCGGTGGTCTTCCTCGCGG 13814 Query 65972 CCGGGTAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGC 66031 ||| | | |||||||||||||| ||||| || || ||| | ||| || ||||||||| Sbjct 13815 CCGCATCATCGAGATCTACGGTCCGGAGTCGTCGGGTAAGACCACGCTGACCCTCCACGC 13874 Query 66032 GGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCT 66091 | | ||||| | ||| || || |||| |||||| | |||||||||||| || | || Sbjct 13875 GATCGCCAACGTGCAGCGCGCGGGCGGCATCGCCGCATTCATCGACGCCGAGCACGCGCT 13934 Query 66092 CGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCC 66151 |||||| || ||||||||| |||||| || || ||||| | || | || |||||| Sbjct 13935 CGACCCCGACTACGCCGCGAAGCTCGGCGTCGACATCGACCAGCTGCTCGTCTCGCAGCC 13994 Query 66152 AGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTC 66211 ||||| || |||||||| || ||||||| ||| | ||||| || |||| | Sbjct 13995 CGACACCGGTGAGCAGGCGCTCGAGATCGCCGACATGCTCGTGCGTTCGGGCGCAATCGA 14054 Query 66212 CATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACAT 66271 | | |||| | ||||| || || ||||| || || ||| ||| ||||||| || || Sbjct 14055 CCTGGTCGTCATCGACTCGGTCGCCGCCCTCGTCCCCAAGGCCGAGATCGAAGGCGAGAT 14114 Query 66272 CGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGAC 66331 || ||||||||||| |||||||| || ||| ||||||| ||||| | || ||||| || Sbjct 14115 GGGCGACTCGCACGTGGGCCTGCAGGCGCGCTTGATGTCGCAGGCGCTCCGGAAGCTCAC 14174 Query 66332 CGGCACGATTG--CCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAG 66389 ||| | || |||| ||||| || | | | | | || ||||||||||||||| Sbjct 14175 CGG-TGGCCTGAACCAG-ACCAAGACCACCGCGATCTTCATCAACCAGCTGCGCGAGAAG 14232 Query 66390 ATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTC 66449 ||||| ||| || |||| || |||||||| |||| || ||||| || ||| Sbjct 14233 ATCGG---CGTCTTCTTCGGCTCGCCCGAGACCACTGCCGGCGGGAAGGCGCTCAAGTTC 14289 Query 66450 TACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCT 66509 ||||| ||||| || | || ||||| | |||| || |||||| || || || Sbjct 14290 TACGCGTCGGTACGCCTCGACATCCGCCGCATCGAGACGCTGAAGGACGGTACCGACGCG 14349 Query 66510 GTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAG 66569 ||||| |||||||| ||||| ||||| |||||||||||| ||||||| || | ||| Sbjct 14350 GTCGGTAACCGCACTCGCGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAGCAG 14409 Query 66570 GCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAA--CTCCTCGACA 66627 || ||||| |||| | | |||| |||||| || ||||| | ||| ||| ||||| Sbjct 14410 GCGGAGTTCGACATCCTGTTCGGCACGGGCATCTCGCGCGAAG--GAAGCCTCATCGACT 14467 Query 66628 TGGCCGTTTCCCG-AGGGC-TCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAA 66685 | | || || | | ||| || |||||||||| || ||||||| || |||| | | | Sbjct 14468 T--CGGTGTCGAGCACGGCATCGTCAAGAAGTCGGGTGCCTGGTACACCTACGACGGCGA 14525 Query 66686 GAACATCGGCCAGGGCAAGCCCAAGACCGTGCAGTGGCTGAAGGACAACCCGGACGTCGC 66745 | | |||| ||||||||| || || | || ||| | ||| |||| |||| Sbjct 14526 GCAGCTCGGTCAGGGCAAGGAGAACGCCCGGTCGTTCCTGCTCAAGAACGAGGACATCGC 14585 Query 66746 CGCCTCCATCGAACAGACCATCAAGG 66771 || |||||| |||| ||||||| Sbjct 14586 GGCTGACATCGAGCAGAAGATCAAGG 14611 >seq240 Length=32197 Score = 318 bits (352), Expect = 3e-82 Identities = 570/822 (69%), Gaps = 23/822 (3%) Strand=Plus/Plus Query 65919 ACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTA 65978 ||||||||| | | ||||||| ||| || ||| |||| || ||| | ||||| || Sbjct 30985 ACCGGCTCGCTGGGTCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTG 31044 Query 65979 GTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCC 66038 ||||| ||||||||||| || || || || ||| | ||| || ||| || | ||||| Sbjct 31045 GTGGAAATCTACGGTCCGGAATCCTCGGGCAAGACCACGCTGACCCTGCAGGTCGTGGCT 31104 Query 66039 --AATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACC 66096 ||||| | ||| ||| |||| | ||||| | ||||||||||||| | || ||| Sbjct 31105 GAAATGC--AAAAGATCGGCGGCACCTGCGCCTTCGTCGACGCCGAACACGCGCTGGACG 31162 Query 66097 CTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACA 66156 |||||||| || ||| || || | | | | | || || | |||||| |||| Sbjct 31163 TGCAGTACGCCTCGAAGCTGGGCGTCAACCTGGCCGACCTGCTGATCTCGCAGCCGGACA 31222 Query 66157 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCA 66216 | || |||||||| ||||| ||| ||| || || || || ||| | | | Sbjct 31223 CGGGTGAGCAGGCGCTGGAAATCACCGACGCGCTGGTGCGCTCGGGTTCGGTCGACCTGA 31282 Query 66217 TCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGG 66276 |||| || ||||| || |||||||||||||| ||| || ||||||| || || || | Sbjct 31283 TCGTGGTCGACTCGGTCGCGGCCCTGGTGCCCAAGGCCGAAATCGAAGGCGAAATGGGCG 31342 Query 66277 ACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCA 66336 | |||| ||||||||| |||||||||||| ||||| ||||||||||||||| || Sbjct 31343 ATTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGCCA 31402 Query 66337 CGATTGCCAGCACCAAC---ACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCG 66393 | || | |||||| | | ||| | | | || ||| | ||| |||||||| Sbjct 31403 CCATCAAGAAGACCAACTGCATGGTCATCTTCA---TCAACCAGATCCGCATGAAGATCG 31459 Query 66394 GCAACGTG---GGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCT 66450 || || ||| || |||||| ||||||||||| || || || || |||| Sbjct 31460 GCGTGATGTTCGGCAAC--CCCGAA----ACCACCACCGGCGGCAACGCGCTCAAGTTCT 31513 Query 66451 ACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTG 66510 ||||||||||||| |||| ||||| | |||| | | ||| | ||||| |||| | Sbjct 31514 ACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCTCGATCAAGAAGGGCGACGAGGTCG 31573 Query 66511 TCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGG 66570 |||||||| || ||||| ||||| |||||||||||| | ||||| ||| | |||| Sbjct 31574 TCGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCGCCCCCGTTCAAGCAGG 31633 Query 66571 CTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAACTCCTCGACATGG 66630 | ||||| |||| | ||||||| ||||| || ||||| | ||| || ||||| ||| Sbjct 31634 CCGAGTTCGACATCATGTACGGCGCCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGG 31693 Query 66631 CCGTTTCC-CGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAAC 66689 ||| || | | | | | | ||||| || || |||| || ||| | ||| | Sbjct 31694 GCGTGGCCGCCAACG-TGGTGGACAAGTCCGGCGCGTGGTACAGCTACAACGGCAACCGC 31752 Query 66690 ATCGGCCAGGGCAAGCCCAA-GACCGTGCAGTGGCTGAAGGA 66730 ||||||||||||||| ||| | ||||| | | |||||||| Sbjct 31753 ATCGGCCAGGGCAAGGACAACGTCCGTG-AATACCTGAAGGA 31793 >seq5 Length=148305 Score = 102 bits (112), Expect = 4e-17 Identities = 208/303 (69%), Gaps = 11/303 (4%) Strand=Plus/Minus Query 59301 TCGTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCG 59360 |||| |||| ||| || ||||||||||||||||||| ||| || |||| | |||||| Sbjct 31288 TCGTGGGCAACCTCACGGCCGACCCCGAGCTGCGGTACACGCAGAACGGGCTGCCCGTCG 31229 Query 59361 CCAACTTCACCGTCGTGTCCAACGAACGCCGC-CG--CGACGCCCAGGGCAAC---TGGG 59414 | ||||||||| ||| ||| | | | |||| || |||| |||| ||| ||| Sbjct 31228 CGAACTTCACCATCGCGTCGACC---CCCCGCACGTTCGACCGTCAGGCGAACGAGTGGA 31172 Query 59415 TCGACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTAG 59474 |||||||| ||| ||||| || | ||||||| || ||||||| |||| | Sbjct 31171 AGGACGGCGAGGCCCTGTTCCTGCGGGCGTCGGTCTGGCGTGAGTTCGCCGAGCACGTGG 31112 Query 59475 CGGAAAGCCTCCAGAAAGGCCAG-CGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCC 59533 ||| || | |||| ||| || ||||||| | || || ||||||||| Sbjct 31111 CGGGTTCGCT-GACCAAGGGCAGCCGTGTCATCGCGACCGGTCGTCTGCGTCAGCGCTCC 31053 Query 59534 TTCGAGACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGC 59593 | | || | || || | | ||||||| |||||| | ||||| |||||||||||| Sbjct 31052 TACCAGGACCGTGACGGGCAGACCCGCACCGCCATCGAACTCGAGGTGGACGAGATCGGC 30993 Query 59594 CCG 59596 ||| Sbjct 30992 CCG 30990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242446762091108