Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq1741 260 2e-64 seq224 96.9 4e-15 seq5 84.2 3e-11 >seq1741 Length=9891 Score = 260 bits (288), Expect = 2e-64 Identities = 306/411 (74%), Gaps = 2/411 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| || || || ||||| ||||||| |||||||| || ||||| Sbjct 410 AGAGCGTTTCCACGTGGTAAAACCTCCTCAGGGAATACAAGTTTTTCATGAGGCTGATCT 351 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | |||||| || || || || || || |||||||| || Sbjct 350 TGAGCAGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTTGTATAGAAAGTT 291 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTC-TAAG 6441 |||||||| ||||| ||||| || | || ||||||||||| || |||||||| | |||| Sbjct 290 TCGAACTCAGGATCTTCCGCAGCGCGAATTTCTTGTGAAACGAAATCATAAGCACGTAAG 231 Query 6442 GTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAA 6501 |||| || | ||| | || |||||| | |||||||||| | || |||||||| Sbjct 230 TTTAAA-GCTAAACCTACAACACCAATAGCACTCATCCAAAGACCAGTTACTGGAACAAA 172 Query 6502 CAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCA 6561 | |||||| || |||| |||||| || || || || | |||||| || || ||||| Sbjct 171 TAACATAAAAAAGTGTAACCAACGTTTGTTTGAAAAAGCTACACCAAAAATTTGTGACCA 112 Query 6562 GAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTT 6621 |||||| || || || ||||| ||||| || || || |||| || || | |||||| Sbjct 111 GAAACGGTTTGCGGTTACCATTGAATATGTTTCTTCAGCTTGAGTTGGGTTAAACGCACG 52 Query 6622 GAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGC 6672 |||||| |||| |||||||||||||| | ||||| |||||||| || Sbjct 51 GAAAGTGTTTGCACCATCACCATCTTCAAAAAGTGTATTTTCTACAGTTGC 1 >seq224 Length=33074 Score = 96.9 bits (106), Expect = 4e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 176306 TGGAGAATAGGAGACTCGAACTCCTGACAGCCTGCTTGCAAAGCAGGTGCTCTACCAACT 176365 ||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||||| || Sbjct 10251 TGGAGCCTAGGAGATTCGAACTCCTGACATCCTGCTTGCAAAGCAGGCGCTCTACCAGCT 10310 Query 176366 GAGCTAATTCCCCTGGAG 176383 ||||||| |||| |||| Sbjct 10311 GAGCTAAGGCCCC-GGAG 10327 >seq5 Length=148305 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 31214 TCGGGGTGATAGGATTCGAACCTACGGCATCCGCCTCCCAAAGACGGCGCTCTACCAAGC 31273 |||||| || |||||| |||||| || | ||| ||||||||| ||||||||||||||| Sbjct 79699 TCGGGGCGACAGGATTTGAACCTGCGACTTCCCGCTCCCAAAGCGGGCGCTCTACCAAGC 79758 Query 31274 TGAGCTACACCCCG 31287 |||||||| ||||| Sbjct 79759 TGAGCTACGCCCCG 79772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622062595296560