Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_013599.1 Length=36674 Score E Sequences producing significant alignments: (Bits) Value seq2091 279 1e-70 seq27 237 4e-58 >seq2091 Length=8365 Score = 279 bits (308), Expect = 1e-70 Identities = 706/1048 (67%), Gaps = 43/1048 (4%) Strand=Plus/Minus Query 1864 CTCTGCGTTTCACCGCTTCCAGCAGCAGGTCCTGTACTTCGCGTTTAGATTCACGGCGGG 1923 |||| | ||||| ||||||||||| ||||| || || ||||| || | ||| ||| | Sbjct 5898 CTCTCCTTTTCAGGGCTTCCAGCAGGAGGTCTTGCACCTCGCGCTTGGTTTCGATGCGCG 5839 Query 1924 CCATCACCAATTCATCCACCGTGCCCGCCGCCACGATGTGGTGAATAAATACAGGCCGCT 1983 ||| ||| | || || |||||| | ||||| ||||| ||| || || || ||||| | Sbjct 5838 CCAGCACGATCTCGTCGACCGTGTCGCGCGCCAGGATGTAGTGGATGAAGACGGGCCGGT 5779 Query 1984 GATGTCCGGCTTGCGCCTGACGTGTCGGCCCAATGCGTTCGATGATCTGCTGGTACTGCT 2043 || ||||| ||| ||| || || || || |||||||||||||||||||||| | || Sbjct 5778 CGTGGCCGGCCTGCATCTGGCGCGTTGGTCCGATGCGTTCGATGATCTGCTGGTGTTCCT 5719 Query 2044 CCAGGTCCCACCAGTGGCCGAAGAAGGCCAAAATATTTCCGCCGTCTTGCAGATTTAAGC 2103 |||||| ||| || |||||| ||| || || |||||||| || || || | || Sbjct 5718 CCAGGTTCCAGTTCACGCTGAAGAACACCAGGATGTTGCCGCCGTCCTGTAGGTTCAGGC 5659 Query 2104 CATGACCGGCACTGGCCGGATGGGCAAATAGCACGGGAATGTTCCCCGCATTCCAATCGC 2163 | || ||||| |||||||| ||||| || |||||||| || || || || ||||| |||| Sbjct 5658 CGTGGCCGGCGCTGGCCGGGTGGGCGAACAGCACGGGGATCTTGCCGGCGTTCCAGTCGC 5599 Query 2164 GGATCGTGTCGGGGTGTTTGTCCAAAGCACGCCCCTTGGGGAAGGCACGCTGCAACCGTG 2223 | | ||| | || | ||||| | || ||||||||||| || ||| || | Sbjct 5598 GCAGCGTCTGCGGATCCTTGTCGAGCTGGCGGCCCTTGGGGAACGCCTTAAGCAGGCGCG 5539 Query 2224 CGACATCACTTTTAAAGTGATACGCCACCAACACCGGCATACCGGCGGCTTCTTCGATAA 2283 | | || || ||||| || ||||||| ||||||||| ||||| ||||| || || | Sbjct 5538 CCAGGTCGGACTTGAAGTGGTAGGCCACCAGCACCGGCATGCCGGCCGCTTCCTCAATGA 5479 Query 2284 TGTCGTGCAGCGCCTCTAATTTCGCATCGTGCACGACTTCCCAGGCCTGACGTG-TGTCA 2342 |||| |||||||| | || | |||||||| | |||| ||| |||| ||| Sbjct 5478 CTTCGTCCAGCGCCTGCAGCTTGACGTCGTGCACCTCGGCCCA---CTG-CGTGCCGTCC 5423 Query 2343 TCG---GTGTACAGCGCACCATTGGCCAGTTGCAGGCATTTAATTGTCTTGCTGGCGGCG 2399 ||| ||| || || |||||||| |||| ||| || || |||||| || ||| Sbjct 5422 TCGCCTACGTAGGCGGCGCCGTTGGCCAGCTGCAAGCACTTCATCGTCTTGGCCGCCGCG 5363 Query 2400 TTAAAGGCTTCTACTTC---AGCACCGCATTCCAAGGCGATGAACATATCTTGTTCCATC 2456 || || || || ||||| ||||| || | ||| |||||| | | |||||| Sbjct 5362 TTGAACGCCTCGACTTCGTGCTCACCG-AT--CTGGGC---GAACATGGCCTTTTCCATG 5309 Query 2457 GCCTTGTACAGACGTTGCGCATGTGCTGGCAACGCAACGCGAATCGTATTGACAATCGGC 2516 | | ||| || | || | || |||| | ||||| ||||| ||||| || || Sbjct 5308 TCGTCGTAGAGCGCGCGGGCCTTGGCCGGCAGGTCGACGCGGATCGTGTTGACGATGGGG 5249 Query 2517 TGGCGTAAATCGAAGTACGCCTGTGGATCAAGTGATAAACACAGGTCGCGTATCTTGTCT 2576 | | ||||| | | | | || || || | ||||| ||||| || ||| Sbjct 5248 TCCTTCAGGTCGAACCAGTCGCGCGCGTCCAGCGACAGGCACAGATCGCGCATGGCGTCC 5189 Query 2577 TGAATCTCTTGAGATGCATGTGGCGTGGGCGCAAAGCGCACCGCATGCGGATCACTGCCG 2636 | |||| | | ||| ||| || ||| | || | |||| || ||| Sbjct 5188 TCGATCTGCT------CCTGT-GCGAAGG-GCAGTG-GCTC--GATGC----CATAGCC- 5145 Query 2637 ATCTGCA--TCGCACGGAACCAGCGATCGATAAACGC-TTTAAAATGCGTCCCAAGCCG- 2692 ||| | | || ||||||||||| | | ||||| | || | || ||| ||||| Sbjct 5144 ATC-GAAGGACGGTCGGAACCAGCGCTGGCGGAACGCGTCGAACGTTCGACCC-AGCCGC 5087 Query 2693 TGCCCCACGATCCACCATCCACATCAGCGCCCACAGGTCCTGTAGCCCATTGGGCGCGGG 2752 || ||| | |||| ||| | | |||| || |||||||| |||||||| | || Sbjct 5086 TGGCCC-TGGTCCAAGTACCAGGCCTGGCCCCATAGATCCTGTAGGCCATTGGGGGACGG 5028 Query 2753 CGTGCCGGTCAACCCAACGTAGCGCTCCACCTTGGTATGC-ACATGCGTGGCCAGTGCGC 2811 ||||||||||| | | || || || | | | | ||| || ||| | |||| || | Sbjct 5027 CGTGCCGGTCAGCTCGACAAAGTGCGCGGCGTGCTTGTGCGCCACGCG-GCCCAGCGCCC 4969 Query 2812 GGGCGCGCCGTGTTCCTTGCCGCAGCCGGAACCCTTTCAACTTGGAGCACTCATCGGCGA 2871 |||||||| |||| || || |||||||| || || || | ||||| | |||| ||||| | Sbjct 4968 GGGCGCGCTGTGTGCCCTGGCGCAGCCGAAAGCCCTTGAGCTTGGTGGACTCGTCGGCCA 4909 Query 2872 CCACCATACGGAACGGCCAACGGTCCTT 2899 | | | | |||||||| |||||| || Sbjct 4908 CGATCTTCGCGAACGGCC-ACGGTCGTT 4882 >seq27 Length=64058 Score = 237 bits (262), Expect = 4e-58 Identities = 645/988 (65%), Gaps = 31/988 (3%) Strand=Plus/Plus Query 4827 AACGCGTGCAGCTTGGGGGTTTCACCGGCCAGCCACGCCAATACGCGGCCTTCAATGTTG 4886 || || |||||||| || || ||||||||||| || |||| ||||| |||||| Sbjct 1994 AAGGCCTGCAGCTTCCAGGACTCGCCGGCCAGCCAGGCAGCGTCGCGCCCTTCGATGTTG 2053 Query 4887 GACAGATCGGCCACGACCAGCTTTTTATGGGTTGGTGCAATCAGACAGCTGCGCAGCGCG 4946 | ||| |||||||| ||||||||||| | || || | | |||| ||| | || Sbjct 2054 GCCAGGTCGGCCACCACCAGCTTTTTCCCGCGGGGAGCCACGATGCAGCCGCGGATTGCC 2113 Query 4947 CTGCTGGTCAGCGCCATGACATCGTCAAATACTAAATCCACACAACCGGCTTTCATGGCA 5006 ||||| || |||| || | || | | | ||| | |||| || ||||| Sbjct 2114 GCGCTGGCCACTTCCATCACGTTCTCGTAAATGAGGTCCGCCGCGCCGGTCTTGATGGCG 2173 Query 5007 TCAATGCCAACCGTGATCGCTTCTTG---------------------GCTGAGCGTGGGG 5045 || ||||| | |||| | || || || || | |||| Sbjct 2174 TCGATGCCGAAGTCGATCTCGTCCTGCAGGGCCTCGTCGCGCAGCGTGCCGATCTTGGGC 2233 Query 5046 CGGGGCAGGTTGTGCGGCTGAAACAGCCGCCCCGCCCACCGTCCGGTGCGACTGGCCCCG 5105 || |||||||| |||||||| | ||||| || ||||| || | ||||| | ||| ||| Sbjct 2234 CGTGGCAGGTTCTGCGGCTGCCAGAGCCGGCCGGCCCAGCGCCGTGTGCGGCCGGCGCCG 2293 Query 5106 TTGAATTGCAGCGTGCCGCGCAGGCGGCCATCGCGGCTGGTGCAGTTCAGCAGCGCCTGA 5165 ||| |||||| || ||||||||||| ||| ||||| || ||| | ||| || Sbjct 2294 GCGAACTGCAGCAGCCCCCGCAGGCGGCCGTCGGCGCTGGCGCCGTTGATGAGCCGCTTG 2353 Query 5166 TACTTAGCGGTGCTGGTGGTGCTGGCTTGCCTGCGGATGGACAGCAGTTCCCGCACCGTC 5225 ||||| |||||||| ||||||||| ||| |||||| | ||| || || |||| || | Sbjct 2354 TACTTGCTGGTGCTGGAGGTGCTGGCCTGCAGGCGGATCGCCAGGAGCTCGCGCAGCGCC 2413 Query 5226 TCTGGCAACAGCGGATCGTCAAGGCAACGCTCTACCGTGTGTTGCTGCATGTCCGGCAAC 5285 |||| | | | || || | || || || | |||| ||||| ||| |||| | Sbjct 2414 CAGGGCAGCGCCTGGTCTTCGATGCGCCGTTCCAGCGTGCTCGCCTGCAGGTCGGGCAGC 2473 Query 5286 GCCACGCCGTGCGCGGTGCTCAGGTGGTGTAACAGTGCATCGCGCTGGGTTGCCGCCTGC 5345 | ||||||| | ||| ||||| | ||| ||||||| ||| || | || Sbjct 2474 TCGACGCCGTACTCGGCCAAGAGGTGCGCCAGCAGCTTGTCGCGCTTGGTGGCAGACTCG 2533 Query 5346 ACCACTCCTGCTGTGAGGTCACTGGTGCGCTCGGCCAATGCTTGCTTGGCGCGTTCCACA 5405 ||| | || | || || || || || |||| | | || ||||||||| ||||| Sbjct 2534 ACCGCACCGTCGGTAAGCTCGACCGTCCGGGCGGCGAGGGATTTCTTGGCGCGCTCCACT 2593 Query 5406 GCGCCGATGGCGGCCTGCGCTAAGTCCGTATCGACCAGAACGCCTCGGTCATTAATAGTT 5465 ||| | ||||| ||| || | ||| | || ||||| ||||| || | || || Sbjct 2594 GCGGTAACGGCGGTCTGGGCCAGTTCCCTGTCCACCAGCACGCCCCGCTGGTTGATGCGC 2653 Query 5466 TGGTCCAGAAACCACAGCGCCAGCTCCGCCCCCGTGTAGTTGTGGGACGGCA---AGCGC 5522 || ||||| | |||||| | | ||| | || |||||||| || |||| ||| Sbjct 2654 TGATCCAGCAGCCACAGGTCGAACTCTTCGCCGGTGTAGTTCCAGGTAGGCATTTTGCGG 2713 Query 5523 TTCACCACGTCCCGCATGGCCGTCACATCGCGCCTGGCGTACTCCACAAACTGTGCCCAT 5582 | | | ||||||||||| | || | | |||||||| || ||||||||||| Sbjct 2714 T---AGATGACCCGCATGGCCTCGATGTCTTGGCCAGCGTACTCGACGAACTGTGCCCAC 2770 Query 5583 TCGGTCGGATGGGTGTCACGTGTGGCACGGCGCAACGTGCAGTGGGTCGGGCGTGGTTTG 5642 |||| |||||| |||| || ||||| |||||||| | || | || || || ||| Sbjct 2771 TCGGCCGGATGCGTGTGGCGGGTGGCGCGGCGCAATGCCATGTTCTTGGGCCGGGGCTTG 2830 Query 5643 CAAAACAG-TGCA-ACGAGCCGTTTGCCGTCCTTGGCCTTGGCTTGCTCCACAGGAACGC 5700 || || || || | |||| |||||| |||| |||| || |||| || ||| Sbjct 2831 CAGAAGAGCTGGATGAAAGCC--TTGCCGGTCTTGAGCTTGCGCTGGTCCAGCGGCACGT 2888 Query 5701 GCAGCAGCTCGCATAGCGTACCCAGCGCCCCAGGCAGCGCATGGGCCAAGGCCTGGGCCA 5760 || || |||||||| | ||||||| || ||||| || || | ||||||| ||| Sbjct 2889 TCATCACGTCGCATAGGATGTCCAGCGCACCGGGCAGGGCGTGTGTATAGGCCTGCACCA 2948 Query 5761 TTGAATCGCGCCAGCGCTCCAAGGGGAT 5788 | | || | |||| | || |||||| Sbjct 2949 TCGTGTCCCACCAGGCCGCCTCGGGGAT 2976 Score = 136 bits (150), Expect = 9e-28 Identities = 186/257 (72%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 4012 CGGTAATGATTTCGTCGTGCACGGTAAGCACGATGCTGTATCCGGCGGCTTCAATCGCAG 4071 |||| |||||||||||||| ||||| |||||||| ||| |||||||| || | ||| | Sbjct 1278 CGGTGATGATTTCGTCGTGGACGGTCAGCACGATCTGGTAACCGGCGGCCTCGACCGCCG 1337 Query 4072 GCATGCAGGCGGCCAACACGTCGCGGCTGACAGCTTGGGTGATGTTCTCGACCAGCTTGC 4131 ||||| | ||||| | |||||| || | ||| | |||||||| |||||||| Sbjct 1338 GCATGTTGTGGGCCAGAATGTCGCGCGCGAACGACTGGCAGGCGTTCTCGAACAGCTTGC 1397 Query 4132 CGCCGTAGGTGGTGATGCGCGTCCATTTGC-GCGTTACCGGATGCGTGCCCATGTAGGAC 4190 |||||||| || | ||||||||||||| || ||| || | | ||||||||| || Sbjct 1398 CGCCGTAGCTGTGCAGCCGCGTCCATTTGCGGCTGTACTGG-TTCACGCCCATGTACGAG 1456 Query 4191 AGCGCGCCGTGCTCATCGACTCTGGGAGCGGCGTAGTAAAGCACCCGCCCCGACGGCAGA 4250 | | |||| || ||||| ||| | || |||| | || | ||| || ||||||| Sbjct 1457 AACTTACCGTTGTCGTCGACCTGGGGGGAGGGGTAGCACAGGAACCGGCCGGACGGCATG 1516 Query 4251 CGCAGACGCAGCCATGC 4267 || | |||||||| || Sbjct 1517 CGTATGCGCAGCCAGGC 1533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117224064048168