Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq7728 140 4e-28 seq1162 96.9 4e-15 seq1176 95.1 1e-14 seq12 95.1 1e-14 seq73 87.8 2e-12 seq1233 82.4 9e-11 >seq7728 Length=1087 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| |||||||| |||||| || || |||||||| || || ||||| || Sbjct 262 CGCAGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGCGTGCGGCCG 203 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || || | ||||||||| || | || | | |||||| Sbjct 202 TCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCAGGGGGGATCCCTTCCTTG 143 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| | ||| | || | | |||||||| | || ||||| | |||||| Sbjct 142 TCCTGGATCTTTTGCTTCACATTCTCGATTGTGTCGCTGGGCTCAACATCTAGGGTGATG 83 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||||||||| || || || ||||| ||||| Sbjct 82 GTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 48 >seq1162 Length=13745 Score = 96.9 bits (106), Expect = 4e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||| || | || |||||||||||| |||||||| | || |||||| | || || Sbjct 13623 CACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCCAGGGTGCGCCCATCCTC 13682 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 ||||||||||| || || |||| ||||||||||||| || | || |||||||||| Sbjct 13683 AAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 13740 >seq1176 Length=13603 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 46357 ATATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATT 46416 |||| | ||||| || | | |||| |||||| || | || |||||| ||||| || Sbjct 12485 ATATCAGTTGCCGCCACGCAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTT 12544 Query 46417 GTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTG 46476 |||||| | || ||||| | || || ||||||||||| || || |||| ||||||||| Sbjct 12545 GTAGTCAGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTG 12604 Query 46477 GTCGGCCGGCACGCTCTCCTTGTCC 46501 ||| | || | || |||||||||| Sbjct 12605 GTCAGGAGGAATGCCCTCCTTGTCC 12629 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||| |||||||| | || ||||| | Sbjct 13266 CGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCA 13325 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| |||||||||||| | || | || ||||||| Sbjct 13326 TCCTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 13385 Query 46499 TCC 46501 ||| Sbjct 13386 TCC 13388 >seq12 Length=84225 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/100 (81%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||| | || |||||| | || || ||||||||||| || || Sbjct 81 CTCCTTTTGGATGTTGTAGTCAGCCAGGGTGCGCCCATCCTCAAGCTGCTTGCCCGCAAA 140 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 |||| ||||||||||||| || | || |||||||||| Sbjct 141 GATCAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC 180 >seq73 Length=47289 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||| || | || ||| || ||||| ||||||||| || ||||| | Sbjct 32412 CGCAGTACCAGGTGAAGCGTGGACTCTTTCTGGATGCTGTAGTCGGCCAGGGTGCGGCCA 32471 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| | ||| || |||||||||||||||| || | || ||||||| Sbjct 32472 TCCTCAAGCTGCTTGCCCGTGAAGATTAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTG 32531 Query 46499 TCC 46501 ||| Sbjct 32532 TCC 32534 >seq1233 Length=13172 Score = 82.4 bits (90), Expect = 9e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || ||| || ||||| ||||| |||| || ||||| || Sbjct 13073 CGCAGCACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAATCGGCAAGGGTGCGGCCG 13132 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478 || || ||||||||||| || || |||| ||||||||||| Sbjct 13133 TCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGT 13172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565181883225480