Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_018283.1 Length=58065 Score E Sequences producing significant alignments: (Bits) Value seq75 172 2e-38 seq1 149 2e-31 seq116 141 3e-29 >seq75 Length=46716 Score = 172 bits (190), Expect = 2e-38 Identities = 326/470 (69%), Gaps = 36/470 (8%) Strand=Plus/Minus Query 20622 ACCTGCGTGACGGCCATGCGGTACAGCGCCGGCCAGGTCTCGGGGTGCGGCTTGCCGGGC 20681 ||||||||| ||||| |||||| || |||||||||| | |||||||||||||| ||| Sbjct 34041 ACCTGCGTGGCGGCCTGGCGGTAGAGATCCGGCCAGGTGTGCGGGTGCGGCTTGCCCGGC 33982 Query 20682 CGCCATACGCGCTGATACAGCGCCCACGAGCCAGCCTCGTCACCGCGCGACGGCAGCGCC 20741 ||||| |||| | ||||||| ||||| || | | || || | |||||||||| Sbjct 33981 CGCCAGGTGCGCAGGTACAGCGACCACGCCGCATCTACATCGCCTATGGCCGGCAGCGCC 33922 Query 20742 TTCGGATCGGTCCACAACAGCAGGCGGGCG-CACGCGGCGGCCAGTACGTCGTCCTCGGC 20800 |||||||||||||| | ||||||||| || ||| |||| |||||||||||||| | | Sbjct 33921 TTCGGATCGGTCCAGAGCAGCAGGCGCGCCACAC-CGGCCGCCAGTACGTCGTCGTATTC 33863 Query 20801 CAGTGCCTTGTAGATCGCCGGTCGCGAGAACAGG--ACGTTGCGCTTCTCGCACA----C 20854 || || |||||||| ||| | |||| || ||||| || ||||| | Sbjct 33862 GAGCGCGGCATAGATCGC--GTCCGGGTCGCAGGCCACACTGCGCGCCTTGCACAACGCC 33805 Query 20855 GGCA-TTGGTCAGGTGCGCGACGCTCGGATGGGTCATGATCCCCTTCACACCGCCGCCGC 20913 | || ||||| ||| || ||| | | ||| || | ||| ||| ||||||| || Sbjct 33804 GCCAGGTGGTC-CTTGCTCGCCGCGTGCA-GGGACACG---CCCCACACCCCGCCGCGGC 33750 Query 20914 ---------------TCTCGAACTGCCAGAAGCCCCGCGCCGGGCCGCCGCCTTCCTGCA 20958 ||||||| ||||||||||| || || || |||| | || || Sbjct 33749 TGGCGCGCGTCCCCTTCTCGAATTGCCAGAAGCCGCGGGCGGGTCCGCTG--ATCTGGC- 33693 Query 20959 AACGCGTGC-GGAACCGGCTTTCCTGCAAGCCGATCGCCAGCAGCATCACGCGGGCCTGC 21017 | |||| ||| ||||||||||||| ||| || ||||||||||| ||||| || | | Sbjct 33692 -GCCTGTGCACGAAGCGGCTTTCCTGCAGGCCAATAGCCAGCAGCATGACGCGCGCGTCC 33634 Query 21018 GGGCTGTCAAAGCGGCTCGGCAACAGCCGCAGCGCGGGATCGATGGCGGT 21067 || |||| | || ||||| |||| ||| || ||| ||| || || Sbjct 33633 GGCGTGTCCATACGCGCCGGCAGCAGCGCCAGTGCCGGAGTGATCGCTGT 33584 >seq1 Length=201307 Score = 149 bits (164), Expect = 2e-31 Identities = 318/466 (68%), Gaps = 46/466 (10%) Strand=Plus/Minus Query 20633 GGCCATGCGGTACAGCGCCGGCCAGGTCTCGGGGTGCGGCTTGCCGGGCCGCCATACGCG 20692 |||| |||||| || |||||||||| | | ||||||||||| |||||||| ||| Sbjct 85451 GGCCTGGCGGTAGAGGTCCGGCCAGGTTTGCTGATGCGGCTTGCCAGGCCGCCAGGTGCG 85392 Query 20693 CTGATACAGCGCCCACGAGCCAGCCTCGTCACCGCGC---GACGGCAGCGCCTTCGGATC 20749 | | ||||||||||| ||| || || | ||| | | |||||||||||||||||| Sbjct 85391 CAGGTACAGCGCCCA---GCCGGCGCCGACGTCGCCCACGGCCGGCAGCGCCTTCGGATC 85335 Query 20750 GGTCCACAACAGCAGGCGGGCGCACG-CGGCGGCCAGTACGTCGTCCT------CGGCCA 20802 |||||||| |||||| || ||| ||| | |||||||| |||||||| | Sbjct 85334 GGTCCACAGCAGCAGCCGCGCG-ACGCCTGCGGCCAGCACGTCGTCATACNNNNNNNNNN 85276 Query 20803 GTGCCTTGTAGATCGCCGGTCGCGAGAACAGG--ACGTTGCGCTTCTCGCACACGGCATT 20860 | || |||||||| ||| | |||| ||| |||| || ||||| ||| Sbjct 85275 GCGCGGCATAGATCGC--GTCCGGGTCGCAGGCCACGCTGCGGGCCTTGCACA--GCA-C 85221 Query 20861 GGTCAGGTGCGCGACGCTCGGATGGGTCATGATC---CCCTTCACACCGCCGCCGC---- 20913 ||||| || | ||||| | | || || | ||| ||| ||||||| || Sbjct 85220 CGTCAGCTGGTCCTTGCTCGCAGCGTGCAGGAACACGCCCCACACGCCGCCGCGGCTGGC 85161 Query 20914 -----------TCTCGAACTGCCAGAAGCCCCGCGCCGGGCCGCCGCCTTCCTGCAAACG 20962 ||||||||||||||||||| || |||||||||| | |||| || Sbjct 85160 GCGCGTGCCCTTCTCGAACTGCCAGAAGCCGCGGGCCGGGCCGCGG---ATCTGCTGGCG 85104 Query 20963 CGTGCG-GAACCGGCTTTCCTGCAAGCCGATCGCCAGCAGCATCACGCGGGCCTGCGGGC 21021 ||| | ||| || |||||||||| |||||| || |||||||| |||| | |||| ||| Sbjct 85103 -GTGAGTGAATCGACTTTCCTGCAGGCCGATGGCGAGCAGCATGACGCACG-CTGCCGGC 85046 Query 21022 -TGTCAAAGCGGCTCGGCAACAGCCGCAGCGCGGGATCGATGGCGG 21066 | || | ||| ||||| |||| ||||||||| | || |||| Sbjct 85045 GTATCCATGCGCGCCGGCAGCAGCGCCAGCGCGGGCTTAATTGCGG 85000 >seq116 Length=41094 Score = 141 bits (156), Expect = 3e-29 Identities = 284/405 (70%), Gaps = 42/405 (10%) Strand=Plus/Plus Query 20627 CGTGACGGCCATGC-GGTACAGCGCCGGCC-AGGTCTCGGGGTGCGGCTTGCCGGGCCGC 20684 ||| |||||| ||| |||| || |||| || || | || || | |||||||| |||||| Sbjct 5289 CGTCACGGCC-TGCTGGTAAAG-GCCGCCCCAGCTGTCCGGCTTGGGCTTGCCCGGCCGC 5346 Query 20685 CATACGCGCTGATACAGCGCCCACG-AGCCAGCCTCGTCACCGCGCGACGGCAGCGCCTT 20743 || |||| ||||||||||||| | ||| || | ||| ||| || |||||||||||| Sbjct 5347 CAGGTGCGCAGATACAGCGCCCAGGCCGCCTGCGT-GTCGCCGACCGGCGGCAGCGCCTT 5405 Query 20744 CGGATCGGTCCACAACAGCAGGCGGGCGCACG-CGGCGGCCAGTACGTCGTCCTCGGCCA 20802 |||||||||||| | |||||| || ||| ||| |||||||||| |||||||| | ||| Sbjct 5406 CGGATCGGTCCAGAGCAGCAGCCGCGCG-ACGCCGGCGGCCAGCACGTCGTCGTACTCCA 5464 Query 20803 GTGCCTTGTAGATCG---CCGG-TCGCGAGAACAGGACGTTGCGCTTCTCGCACACGGCA 20858 | ||| ||||||| |||| |||| | ||| ||||| || ||||| || Sbjct 5465 GCGCCGCATAGATCGCATCCGGATCGC----CCGCCACGCTGCGCGCCTTGCACA--GC- 5517 Query 20859 TTGGTCAGGTGCGCGACGCTCGGATGGGT-CATGATC---CCCTTCACACCGCCGCCGC- 20913 ||| |||||| | ||| || | || || || | ||| ||| ||||||| || Sbjct 5518 GTGGCCAGGTGATCCCTGCT-GGCCGCGTGCAGGAACACGCCCCACACGCCGCCGCGGCT 5576 Query 20914 --------------TCTCGAACTGCCAGAAGCCCCGCGCCGGGCCGCCGCCTTCCTGCAA 20959 ||||||| |||||||| || || || || |||||| | || Sbjct 5577 GGCGCGGGTGCCCTTCTCGAATTGCCAGAAACCGCGGGCGGGCCCGCCGATCTGGCGCCG 5636 Query 20960 ACGCGTGCGGAACCGGCTTTCCTGCAAGCCGATCGCCAGCAGCAT 21004 | || ||| ||||||||||||| |||||| ||||||||||| Sbjct 5637 ATGC---ACGAAGCGGCTTTCCTGCAGGCCGATGGCCAGCAGCAT 5678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185668761997026