Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq3015 147 4e-30 seq4178 116 7e-21 seq1726 89.7 9e-13 seq240 89.7 9e-13 seq1994 87.8 3e-12 seq760 86.0 1e-11 >seq3015 Length=5646 Score = 147 bits (162), Expect = 4e-30 Identities = 458/695 (66%), Gaps = 27/695 (4%) Strand=Plus/Minus Query 107478 CGCTAGCCGCGTCGATACGCGTCAGATCGGACTTGCCCGAGAGCTTCTCGTCCATGGAGC 107537 ||| |||||| || ||||||| ||||||| | |||||||| | | ||| || | Sbjct 3026 CGCAAGCCGCCTCCGCCCGCGTCATCTCGGACTGGGCCGAGAGCGGCGAGAACATCGATC 2967 Query 107538 CCGACACGTCCACCATGACCACGGTGCGGCCCGGCAGCTTCGGCATGTCGGCGATCGAGG 107597 |||||||||| | || || | |||||||| ||| || ||| || ||| Sbjct 2966 CCGACACGTCGATCAGGAGCCGCGTGCGGCCATCGAGCCGCGCGTAGTCCTTGACCGACT 2907 Query 107598 CGATCAGCGCTTCGTCCAGGGCCGGTTCGAACGTCGGCGCCGCACGAGCCGCCGCGATGT 107657 | || |||| | || || |||| ||||| |||||| || ||| ||| |||| Sbjct 2906 TCAGCATCGCTGCCTCGAGCTCCGGCTCGAAGTCCGGCGCATACCGCGCCACCGTGATGA 2847 Query 107658 AGCGGAACGGCAGGACGCGGTGCGCGCCGCCCTTGCGGGCCTTGATCGCATCGATCACCA 107717 ||||| | ||||||| ||||| || |||| ||||| | |||||| || | | | Sbjct 2846 AGCGGTAGGGCAGGATGCGGTCCGT-CCGCA-TTGCG----TCGATCGCCTC---CGCGA 2796 Query 107718 GCTTGCGGT-CGACTCCG--GCCTGCTCCATGTTGCGCAGGTTGCGCAGCAGGGCGAGGT 107774 | ||| || | || |||| || ||| |||||||||||| ||||| || || Sbjct 2795 TGGTTCGGCGCGGCACCTCAGCCTTCTGCATCAGGCGCAGGTTGCGGAGCAGCGCCAGCC 2736 Query 107775 AGCCGAGCTTTTTGTCTTCCAGCAGACGGGTGAAC--TCCGCCTTCTTGTCGCCGCCGGC 107832 ||||||| || | | | ||| || ||| ||| | |||||| ||||| Sbjct 2735 CGCCGAGCCGGTTCTTGGCGATCAGGCGCTCGAAGGTTCCACG--CTTGTCCTTGCCGGA 2678 Query 107833 CGACAGCGCTACTTCCCAGGTGTCCGGCGACTCCAGCGTCTGATCGACCAGCCCCTTGTA 107892 ||| |||| || ||||||||||| ||||| ||||| ||||| ||| ||| | Sbjct 2677 CGAGAGCGAAACCTCCCAGGTGTCGGGCGAGGCCAGCTCGCCGTCGACGAGCTGCTTCCA 2618 Query 107893 CAGGGACTGACGCTCG---TCGTTGGCGGCCTTCGGGTGGCTCAGGAACAGCACGTCGCG 107949 || || || || || || |||| || | |||| ||||||||||||||| Sbjct 2617 CACCTTCTCCTGCGCGGCATCCTT--CGGC-TTGGCGTGGACCAGGAACAGCACGTCCTT 2561 Query 107950 CAGACGCACTTCCTTGGCGCGGTCGTACTTGGCGATCTGATACGCGTCGAACTTGGCGAA 108009 | ||||| | | |||| |||||||| |||| ||| || ||||||||||||| | Sbjct 2560 GATCCGCACCGCGCCGTCGCGATCGTACTTCGCGAGCTGGTAGGCGTCGAACTTGGTCAG 2501 Query 108010 CGCCTTGGCGAGGCCGAGCTTCATCTGCTTGGACA---GCGGCGCCTTGCG-GGCGCCGT 108065 |||| || ||||| ||| |||||| || | || | |||||| || | Sbjct 2500 CGCCCGCGCCAGGCCCTTCTTGATCTGCGCCGAGACGGGCTGACGCTTGCGCTGCTGCTG 2441 Query 108066 CGCGCGGTGGGTTGTACTTCCAGTACAGCGCCACCAGTTCCGACAGTTCGTCGGCGCGCT 108125 || || | | | | | |||||| | ||| | ||| || | || ||||||| |||| Sbjct 2440 CGGGCCGAGCG-CATCCGCCCAGTAGATCGCAAGCAGCTCGGTCATCTCGTCGGGCCGCT 2382 Query 108126 GGATCACGCGGGCGATCGTCTCCGAGACGAGGCCG 108160 |||||||||| || | ||| || | ||||||||| Sbjct 2381 GGATCACGCGAGCCAGCGTATCGGCAACGAGGCCG 2347 >seq4178 Length=3623 Score = 116 bits (128), Expect = 7e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 191906 CCCGATCCGGTCGACATCCATGTGGGCAAGCGCATCCGCATGCGTCGCAAGACTCTCGGC 191965 ||| |||| || |||| |||| |||| ||| |||| ||||| |||| | |||||| Sbjct 2161 CCCAATCCTGTTGACAAATATGTCGGCAGCCGCGTCCGTATGCGACGCATCATGCTCGGC 2102 Query 191966 GTCAGCCAGGAACAACTCGCCAGCGCGCTGGGTCTGACCTTCCAGCAGGTGCAGAAGTAC 192025 | |||||||| |||| | | ||| | || ||||| ||||||||||||||||| ||| Sbjct 2101 ATGAGCCAGGAGAAACTGGGCGAGGCGTTAGGCCTGACGTTCCAGCAGGTGCAGAAATAC 2042 Query 192026 GAGAAGGGCGGCAATCGCGTCAGCGCGAGCAAGCTGCACGGCATCGGCAAATTCCTGGGC 192085 ||||||||| ||| || ||| |||| ||| |||||| ||| | | ||||| Sbjct 2041 GAGAAGGGCACCAACCGTGTCGGCGCCAGCCGGCTGCAGCAGATCTCCGAGATCCTGCAG 1982 Query 192086 GTTCCGGTCGCCTTTTTCTTCGAAGGC 192112 || |||||| | || | ||||| ||| Sbjct 1981 GTGCCGGTCTCTTTCCTGTTCGACGGC 1955 >seq1726 Length=9999 Score = 89.7 bits (98), Expect = 9e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019 || |||||||||||||||| || ||||||| ||||||||||| ||||||| |||||| Sbjct 8595 GACGCGGGGTGGAGCAGTCTGGCAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGTTCA 8536 Query 133020 AATCCCTCCCCCGCATCCA 133038 ||||| |||||||| ||| Sbjct 8535 AATCCTGCCCCCGCAACCA 8517 >seq240 Length=32197 Score = 89.7 bits (98), Expect = 9e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019 || |||||||||||||||| || ||||||| ||||||||||| ||||||| |||||| Sbjct 16383 GACGCGGGGTGGAGCAGTCTGGCAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGTTCA 16442 Query 133020 AATCCCTCCCCCGCATCCA 133038 ||||| |||||||| ||| Sbjct 16443 AATCCTGCCCCCGCAACCA 16461 >seq1994 Length=8736 Score = 87.8 bits (96), Expect = 3e-12 Identities = 124/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 139529 AGCAGCCCCAGGGCCTTACGCAGGTCCCAGCCATTCAGGTCCCAGACACCTTCAATCGGA 139588 ||||| ||| ||||| |||| |||||||| || |||| | | || ||||| Sbjct 7439 AGCAGTTGCAGCGCCTTGCGCAATTCCCAGCCGGACACGTCCAGTTCGTCGTCGATCGGC 7380 Query 139589 CGCTCGATCACGTCGCGCGGCGTCGTCAGCCCCAGATATTGCGAG---AGCGGGCGAACG 139645 ||||||||||||||||| ||| || || || ||| || | || ||| | | || Sbjct 7379 AGCTCGATCACGTCGCGCTGCGGCGCCACCCGCAGGTA---CCAGTCCAGCTTGTGCACA 7323 Query 139646 TAGAAGAACCGGACGTCGTTGTCGCTATCCGGCGACGGGAAGCCCCAGGCGCG 139698 || | ||| || ||||||| |||||| || ||||| | |||||||||| |||| Sbjct 7322 TACAGGAAGCGCACGTCGTAGTCGCTGTCGGGCGAGGCGAAGCCCCAGCCGCG 7270 >seq760 Length=17990 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 132963 GCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAAT 133022 |||||||||||||| |||||||||| | ||||||||||| | |||||| ||||||||| Sbjct 14129 GCGGGGTGGAGCAGCTCGGTAGCTCGCTGGGCTCATAACCCAGAGGTCGCAGGTTCAAAT 14070 Query 133023 CCCTCCCCCGCATCCAC 133039 || ||||||| |||| Sbjct 14069 CCTGTCCCCGCAACCAC 14053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895676834557080