Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_022067.1 Length=109960 Score E Sequences producing significant alignments: (Bits) Value seq706 145 5e-30 seq332 129 4e-25 seq6499 109 4e-19 >seq706 Length=18769 Score = 145 bits (160), Expect = 5e-30 Identities = 215/302 (71%), Gaps = 11/302 (4%) Strand=Plus/Minus Query 95557 CGCCCCCACGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCACCCTC 95616 |||||||| |||||||| | |||||| ||| ||| ||||| | ||||| || || Sbjct 11039 CGCCCCCATCGGCAGGAACAGCCCGTCGCCCTGTCCGATGAGACGGTCGGCGCCCGGCTG 10980 Query 95617 GTCCAGGATCACCCGGCTATCGGTGAGTGATGCT-GTG---GCGAACGAGAGCCTAGACG 95672 ||| ||||| || || ||||||| ||| ||| ||||||| ||||| || | Sbjct 10979 GTCGAGGATGACGCGCGAGTCGGTGAC----GCTCGTGACCGCGAACGCGAGCCGCGAGG 10924 Query 95673 GCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGA 95732 ||||||||| ||||| || || ||||| || || ||| || ||||| || || || | Sbjct 10923 GCACGTTGGCCTTGATGAGACCCGTGACGACGTCGACGCTCGGACGCTGGGTGGCGAGCA 10864 Query 95733 CGAGATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTT 95792 ||||||| |||||| || || || ||| | |||||| || || | ||||||| | Sbjct 10863 CGAGATGGATGCCGCTGGCCCGGGCGAGCTGCGTGATGCGAACGATCGAGTCCTCGACGT 10804 Query 95793 CTTTCTTGTAGCCGCCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATGTAGG 95852 | | | || ||||||||||||| || ||||||||||| || |||| | ||||| Sbjct 10803 CGCGCGGGG---CGACCATCATGAGGTCGGCGAGCTCGTCGACGACGACCAGCAGGTAGG 10747 Query 95853 GG 95854 || Sbjct 10746 GG 10745 Score = 86.0 bits (94), Expect = 4e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 96082 CATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGGGG 96141 ||||||||| | |||||| |||||||| || ||||||| ||| || |||||||||||||| Sbjct 10457 CATCGAGTTCACGAAGCTCGACTTGCCGGAACCGGTGGAGCCCGCGACCAGCAGGTGGGG 10398 Query 96142 CATTTTGGCCAGGTT 96156 ||| || || ||||| Sbjct 10397 CATCTTCGCGAGGTT 10383 >seq332 Length=27903 Score = 129 bits (142), Expect = 4e-25 Identities = 144/188 (77%), Gaps = 7/188 (4%) Strand=Plus/Plus Query 95671 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 95730 ||| | ||||| ||||| ||||| |||| || || ||| ||| |||||||||||||| Sbjct 24708 CGGGATGTTGGCCTTGATCAGGCCGGTGATGACGTCGACGCTGGGACGCTGCGTCGCCAG 24767 Query 95731 GACGAGATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCG 95788 || || ||||||||||| |||||||||||||| || | |||| | || ||| | ||| Sbjct 24768 GATCAGGTGAATGCCGGCCGCGCGCGCCTTCTGCGCCAGGCGGGCGATCAGTT--CTTCG 24825 Query 95789 ACTTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATG 95848 | || |||||| | ||||||| ||||| ||||||||||||| || ||||||||| Sbjct 24826 A--TC-TTCTTGCCCACCACCATCATCAGGTCGGCCAGCTCGTCGATGACCACCACGATG 24882 Query 95849 TAGGGGAG 95856 ||| || Sbjct 24883 GTGGGCAG 24890 Score = 102 bits (112), Expect = 6e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 95960 TCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATC 96019 || |||||||||||| || ||||| || || || | ||| | | | ||| | |||| Sbjct 25081 TCCGTGACCACCGGCGCCAGCAGGTGCGGAATGCCTTCGTAGACGCTCATTTCGAGCATC 25140 Query 96020 TTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACC 96079 ||||||||||||| ||| || | | | | ||| ||| |||| || | Sbjct 25141 TTCGGGTCGATCAGGATCAGGCGGGTGTGCGAGGCGTCGGCCTTGTACAGCAGCGACAGG 25200 Query 96080 AGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGG 96139 | ||| | |||||| | ||||||||||||||||||| ||| |||||||||||||| Sbjct 25201 ATCATGGCGTTGATCCCGACCGACTTGCCCGATCCGGTGGTGCCCGCCACCAGCAGGTGC 25260 Query 96140 GGCATTTTGGCCAGGT 96155 ||||| |||||||||| Sbjct 25261 GGCATCTTGGCCAGGT 25276 >seq6499 Length=1589 Score = 109 bits (120), Expect = 4e-19 Identities = 184/263 (70%), Gaps = 15/263 (6%) Strand=Plus/Minus Query 95597 AGCTGCTCGGCTCCACCCTCGTCCAGGATCACCCGGCTATCGGTGAGTGATG----CTGT 95652 |||||||||||||| |||| |||||| ||||| ||| | || | ||| Sbjct 1162 AGCTGCTCGGCTCCCTGCTCGCTCAGGATGGTGCGGCTGTCGATCTTCGACGTCACCTG- 1104 Query 95653 GGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGA 95712 ||| |||| | | ||| | ||||| ||||| ||| |||| || ||||| || Sbjct 1103 ---GAAGGAGATGCGGGTCGGGAAGTTGGCCTTGATCGTGCCGGTGATCACGTCCACCGA 1047 Query 95713 GGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCG 95772 || ||||||||||||| || || || |||||||| ||||||||| |||| || | ||| Sbjct 1046 CGGGCGCTGCGTCGCCATGATCAGGTGGATGCCGGCGGCGCGCGCCATCTGCGCCAGGCG 987 Query 95773 GACAATGTTGGCCTCGACTTCTTTCTTGTAGCCGC--CCATCATGAGGTCTGCCAGCTCG 95830 || |||||| || |||| |||| ||||||| ||||| |||| |||| Sbjct 986 CTGGATCGCCCCCTCGATGTC---CTTG--CCCGCCACCATCATCAGGTCGGCCATCTCG 932 Query 95831 TCGACCACTACCACGATGTAGGG 95853 ||||| | |||||||||||||| Sbjct 931 TCGACGATCACCACGATGTAGGG 909 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 95945 ACCGCCT-CGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGG 96003 ||||||| | ||||| ||||| |||||||| | || |||||||| |||| || Sbjct 700 ACCGCCTTCTTCGGG-TCGGTCACCACCGGGGCGAGGAGATGGGGGATGCCGTCATAGAT 642 Query 96004 GGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCG 96063 || ||| |||| |||||| || |||| |||||| ||| | | || || || || Sbjct 641 GGAGAGCTCCAGCATCTTGGGATCGACCATGATCAGCCGGCACTCCTCGGGCTTCAGCCG 582 Query 96064 GTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCC 96123 |||||||| || | | ||| | |||||| ||||||||||| ||||||| ||| Sbjct 581 GTAGAGCAGCGACAGGATCATGGTGTTGATCGCCACCGACTTGCCCGAGCCGGTGGTGCC 522 Query 96124 AGCCACCAGCAGGTGGGGCATTTT 96147 ||||| |||||||| ||||| || Sbjct 521 GGCCACGAGCAGGTGCGGCATCTT 498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351712908934919