Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq7728 149 4e-31 seq1176 95.1 8e-15 seq1162 93.3 3e-14 seq12 89.7 3e-13 >seq7728 Length=1087 Score = 149 bits (164), Expect = 4e-31 Identities = 177/236 (75%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 34748 TTTCCTCC-CCTC--AACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAG 34804 |||||||| |||| | | ||| |||||||| | ||| ||||||||||||||| ||| Sbjct 280 TTTCCTCCGCCTCGCAGGCGCAGAACCAGGTGCAATGTGGACTCCTTCTGAATGTTGTAG 221 Query 34805 TCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCT 34864 ||||| || |||| | || ||||| ||||| || || ||||| || || ||||| || Sbjct 220 TCCGAAAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGATCA 161 Query 34865 TGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGG 34922 | || | ||| |||||||| | || ||||| || || || || || | || ||| Sbjct 160 GGGGGGATCCCTTCCTTGTCCTGGATCTTTTGCTTCAC--ATTCTCGATTGTGTCGCTGG 103 Query 34923 CCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| | ||| |||||||| ||||| |||||||| || |||||||||||| Sbjct 102 GCTCAACATCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 47 >seq1176 Length=13603 Score = 95.1 bits (104), Expect = 8e-15 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| | ||| |||| |||| Sbjct 12509 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATC 12568 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || || ||||| || |||||||| | || | ||||||||||| Sbjct 12569 CTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTC 12628 Score = 95.1 bits (104), Expect = 8e-15 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| | ||| |||| |||| Sbjct 13268 CAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCATC 13327 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| || || || ||||| || |||||||| | || | ||||||||||| Sbjct 13328 CTCCAGCTGCTTGCCCGCAAAAATCAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 13387 >seq1162 Length=13745 Score = 93.3 bits (102), Expect = 3e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||||||| | |||| |||||| || ||||| ||||| | ||| ||||| |||| Sbjct 13621 AGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCCAGGGTGCGCCCATCC 13680 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || |||||||| || |||||||| | || | ||||||||||| Sbjct 13681 TCAAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTC 13739 >seq12 Length=84225 Score = 89.7 bits (98), Expect = 3e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||| |||||| || ||||| ||||| | ||| ||||| |||| Sbjct 61 AGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCCAGGGTGCGCCCATCC 120 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| || || |||||||| || |||||||| | || | ||||||||||| Sbjct 121 TCAAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCGGGAGGAATGCCCTCCTTGTC 179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325661048921381