Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq706 174 1e-38 seq332 107 1e-18 seq180 107 1e-18 seq6499 93.3 3e-14 >seq706 Length=18769 Score = 174 bits (192), Expect = 1e-38 Identities = 253/353 (72%), Gaps = 11/353 (3%) Strand=Plus/Minus Query 94422 CTCGATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCCCCAC 94481 |||||||||| | ||| ||| |||||||||| | || | | || |||||||| Sbjct 11090 CTCGATCTCCGCCTCGCTGACCCACGCGCCCTGCACGCGCAGCGGCTTGGACGCCCCCAT 11031 Query 94482 CGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGAT 94541 ||||||||| | |||||| ||| ||| ||||| | ||||| || || ||| ||||| Sbjct 11030 CGGCAGGAACAGCCCGTCGCCCTGTCCGATGAGACGGTCGGCGCCCGGCTGGTCGAGGAT 10971 Query 94542 CACCCGGCTATCGGTGAGGGACGCT-GTG---GCGAACGACAGCCGCGAGGGCACGTTGC 94597 || || ||||||| |||| ||| ||||||| |||||||||||||||||| Sbjct 10970 GACGCGCGAGTCGGTGA----CGCTCGTGACCGCGAACGCGAGCCGCGAGGGCACGTTGG 10915 Query 94598 TCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAA 94657 ||||||||| ||||| || || || ||| || ||||| || || || |||||||| | Sbjct 10914 CCTTGATGAGACCCGTGACGACGTCGACGCTCGGACGCTGGGTGGCGAGCACGAGATGGA 10855 Query 94658 TGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGT 94717 ||||| || || || ||||| |||||| || || | |||| || || | | Sbjct 10854 TGCCGCTGGCCCGGGCGAGCTGCGTGATGCGAACGATCGAGTCCTCGACGTC--GCGCGG 10797 Query 94718 AGCCACCCATCATGAGGTCCGCGAGTTCATCCACCACTACCACGATGTAGGGG 94770 || | ||||||||||||| ||||| || || || || |||| | ||||||| Sbjct 10796 GGCGA-CCATCATGAGGTCGGCGAGCTCGTCGACGACGACCAGCAGGTAGGGG 10745 >seq332 Length=27903 Score = 107 bits (118), Expect = 1e-18 Identities = 137/184 (74%), Gaps = 11/184 (6%) Strand=Plus/Plus Query 94593 GTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 94652 |||| |||||| ||||| || | || || ||| ||| |||||||||||||||| || Sbjct 24714 GTTGGCCTTGATCAGGCCGGTGATGACGTCGACGCTGGGACGCTGCGTCGCCAGGATCAG 24773 Query 94653 ATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAAT--GTTGGCCTCAACCTCT 94710 |||||||||||||| |||||||||||||| | |||| | || ||| | || | | Sbjct 24774 GTGAATGCCGGCCGCGCGCGCCTTCTGCGCCAGGCGGGCGATCAGTT--CTTCGATC--- 24828 Query 94711 TTCTTGTAGCCAC--CCATCATGAGGTCCGCGAGTTCATCCACCACTACCACGATGTAGG 94768 |||||| |||| ||||||| ||||| || || || || | || ||||||||| || Sbjct 24829 TTCTTG--CCCACCACCATCATCAGGTCGGCCAGCTCGTCGATGACCACCACGATGGTGG 24886 Query 94769 GGAG 94772 | || Sbjct 24887 GCAG 24890 Score = 98.7 bits (108), Expect = 7e-16 Identities = 117/156 (75%), Gaps = 7/156 (4%) Strand=Plus/Plus Query 94968 AGGGGTCGCCCG-GTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCG 95026 ||| |||| || ||| |||||||| | | ||| | |||||| | |||||||||| Sbjct 25172 AGGCGTCGGCCTTGTACAGCAGCGACAGGATCATGGCGTTGATCCCGACCGACTTGCCCG 25231 Query 95027 ATCCGGTCGCGCCAGCCACCAGCAGATGCGGCATCTTGGCCAGGTTCAGGGAGACGTCC- 95085 ||||||| | ||| ||||||||||| ||||||||||||||||||| || || || Sbjct 25232 ATCCGGTGGTGCCCGCCACCAGCAGGTGCGGCATCTTGGCCAGGT---CGGCCACCACCG 25288 Query 95086 --TTACCCTCGACGTCCTTGCCCACTGCCACGGTCA 95119 || || ||| ||||||||||| |||| ||||| Sbjct 25289 GGTTGCCGGCGATGTCCTTGCCCAGCGCCATGGTCA 25324 >seq180 Length=35712 Score = 107 bits (118), Expect = 1e-18 Identities = 175/246 (71%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 69334 GGCTACGCGGAGCTCAACCCCCACGTGGGTGCCATTTACGGCGACTCCATCACGGTGGAG 69393 |||||| | ||| |||| ||||| || || |||||||| ||||||||| ||| | Sbjct 29173 GGCTACAAGCTGCTGGACCCGCACGTCGGCCTGATCTACGGCGATTCCATCACGCTGGCG 29114 Query 69394 CGGGCCCGCGCCATCACCGAGAACCTGGCGAGCAAGGGTTTCGCCTCGTCGAACATCGTC 69453 || | ||||| |||| | | ||| || ||||| || || || ||| | ||| Sbjct 29113 CGTGGCCGCGACATCCTGGTGCGGTTGGAAAGAAAGGGGTTTGCGTCCGGCAACGTGGTC 29054 Query 69454 TTCGGCGTGGGCTCCTACACCTACCAGATGAAC--ACCCGCGACACCCTCGGCTCCGCCA 69511 | ||| | ||||||||||||||||| || | | |||||||||| | |||||| || Sbjct 29053 CTGGGCATCGGCTCCTACACCTACCA-AT-ACCTGACCCGCGACAGCTTCGGCTGGGCGC 28996 Query 69512 TGAAGGCTACCTGGGCAGAGGTCAACGGC-AAGGGCGTGAACCTTCTGAAAGACCCGGTC 69570 | ||||| || | || |||||||| ||| || || ||| || |||| |||||||| Sbjct 28995 TCAAGGCGACGTACGCCGAGGTCAATGGCGAACCGCAGGAA-CTGGTGAAGGACCCGGTG 28937 Query 69571 ACCGAC 69576 |||||| Sbjct 28936 ACCGAC 28931 >seq6499 Length=1589 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 94860 CACCGCCTCGTCAGCCTCTGTAACCACGGGCTGGAGAAGGTGGGGGATACCGTTGTACGG 94919 |||||||| | | || || ||||| || ||| || |||||||| |||| || Sbjct 701 CACCGCCTTCTTCGGGTCGGTCACCACCGGGGCGAGGAGATGGGGGATGCCGTCATAGAT 642 Query 94920 GGTGAGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCC 94978 || |||||| | ||| ||||| |||| |||||| || | | || || || || Sbjct 641 GGAGAGCTCCAG-CATCTTGGGATCGACCATGATCAGCCGGCACTCCTCGGGCTTCAGCC 583 Query 94979 GGTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGC 95038 ||||||||||||| | | ||| | |||||| ||||||||||| ||||| | || Sbjct 582 GGTAGAGCAGCGACAGGATCATGGTGTTGATCGCCACCGACTTGCCCGAGCCGGTGGTGC 523 Query 95039 CAGCCACCAGCAGATGCGGCATCTT 95063 | ||||| ||||| ||||||||||| Sbjct 522 CGGCCACGAGCAGGTGCGGCATCTT 498 Score = 91.5 bits (100), Expect = 1e-13 Identities = 229/341 (67%), Gaps = 18/341 (5%) Strand=Plus/Minus Query 94435 TCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCCCCACCGGC-AGGAATAA 94493 ||||||||||||| || || | ||| || ||||| || || ||||| | | | Sbjct 1237 TCGGAGACGAACGGCCCGTGCACGCGGGTGA---TGCGC-CCGCCGCCGGCCATGTGCAG 1182 Query 94494 CCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATC 94553 | ||| ||| || | |||||||||||||| |||| |||||| ||||| || Sbjct 1181 CATGTCGCCCTGGCCGAGCAGCTGCTCGGCTCCCTGCTCGCTCAGGATGGTGCGGCTGTC 1122 Query 94554 GGTGAGGGACG----CTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGC 94609 | | |||| ||| ||| || | || | || | |||| |||||| || Sbjct 1121 GATCTTCGACGTCACCTG----GAAGGAGATGCGGGTCGGGAAGTTGGCCTTGATCGTGC 1066 Query 94610 CCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCAC 94669 | || | ||| ||||| || || ||||||||||||| || || || |||||||| || | Sbjct 1065 CGGTGATCACGTCCACCGACGGGCGCTGCGTCGCCATGATCAGGTGGATGCCGGCGGCGC 1006 Query 94670 GCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTG-TAGCCACCCATC 94728 ||||| ||||||| | ||| || |||| | || |||| |||| ||||| Sbjct 1005 GCGCCATCTGCGCCAGGCGCTGGATCGCCCCCTCGATGTC---CTTGCCCGCCA-CCATC 950 Query 94729 ATGAGGTCCGCGAGTTCATCCACCACTACCACGATGTAGGG 94769 || ||||| || | || || || | |||||||||||||| Sbjct 949 ATCAGGTCGGCCATCTCGTCGACGATCACCACGATGTAGGG 909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340088442289232