Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_024135.1 Length=42392 Score E Sequences producing significant alignments: (Bits) Value seq5 113 1e-20 seq923 105 2e-18 >seq5 Length=148305 Score = 113 bits (124), Expect = 1e-20 Identities = 335/502 (67%), Gaps = 26/502 (5%) Strand=Plus/Minus Query 6948 TCAACGGTCTCGGGACCACCTTCAACCTGCCCAACTTCACCGGCGAGCTGTTCAACGTCG 7007 ||| ||||| || || |||| |||||||||||||||| || ||||| ||| | || Sbjct 20932 TCACCGGTCAGGGCACGACCTACAACCTGCCCAACTTCGTGGGTGAGCTCTTCCAGATCA 20873 Query 7008 CGCCGTCGGAAACCCCGTTCCTGTCCGCGATCGGCGGACTGGGACAGG--GCAAG-CGCA 7064 | || | ||||| | ||||| || |||||||| ||| || || ||||| || Sbjct 20872 CCCCCGAGTCCACCCCCCTGCTGTCGGCCATCGGCGGCCTG--ACCGGCGGCAAGTCGGT 20815 Query 7065 CCGAC-TCGGTGGAGTTCCAGTGGCAGATCGAGGGGCTGGAGGAAACCAGCGTCAACAAC 7123 | || ||||| ||| | | ||||||||| | ||| || || || | | ||| Sbjct 20814 C--ACGTCGGTCGAGAACGAATGGCAGATCACCGATCTGCGCGA---CAACGACCAGAAC 20760 Query 7124 TCCAAGATCGAAGGCGCACCCGCACCGGACGC-GTCGGAAGTGTCGCGCTCGGCCGTCAG 7182 | | |||| ||||| ||||||| | | |||| | || ||||||| ||| | Sbjct 20759 GTCGCGCTCGAGGGCGCGAACGCACCGCAGGGTGTCGCTCGCGT-GCGCTCGAACGTGAC 20701 Query 7183 CAACGTGGTGGAGATCCACCAGGAATCCGTTGAGGTCAGCTACACCAAGCAGGCCGCGAC 7242 |||||| | |||||||||||| |||| ||| |||||||||||||||||||||| Sbjct 20700 CAACGTCGCCGAGATCCACCAGTCCGCCGTCGAGACGAGCTACACCAAGCAGGCCGCGAA 20641 Query 7243 CGGGCAGCTGTCCGGTATCAACATCGGCGGCGCGGAC-AACCCCGTGACCGACGAGC-TG 7300 || |||| |||| | ||||| | | || ||| | |||||| | ||||| | Sbjct 20640 GGGTCAGCACGCCGGCACCAACAAC----GAGCAGACGAGCCCCGTCGCTCGCGAGCACG 20585 Query 7301 ACGCACCAGATCATGCTCAAGCTCGCGAAGGTGGGCG---TCGACATCGAGAAGTCGTTC 7357 ||| |||| | ||| | ||||| |||| | || ||| | | | |||||| Sbjct 20584 ACG-TCCAGGTGATGAACGAGCTC---AAGGCGATCGCGAAGGACGTGAACCACTCGTTC 20529 Query 7358 CTGCTCGGCGAGTACGCCAAGCCGACGGATCTGTCCGCACCCCGCAAGACGCGTGGCGTG 7417 | ||| |||||| ||||||| || || | ||||||||||| || || || Sbjct 20528 TGGAACGGTGAGTACCAGAAGCCGAGCGACAACACCACGCCCCGCAAGACCCGCGGTCTG 20469 Query 7418 CTGTCGGCTGTCACCACGAACC 7439 ||| ||| || | ||||||| Sbjct 20468 CTGCAGGCGATCTCGACGAACC 20447 Score = 91.5 bits (100), Expect = 4e-14 Identities = 165/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 7625 CGCAACATCGGCGGCGTCGCCGTCGACACGTTGGTGACCGACTTCGGCACCTTCGGCGTC 7684 |||||| |||||||||| |||| | ||| | | |||||||||||| | || | || Sbjct 20027 CGCAACGTCGGCGGCGTGAACGTCCAGACGATCGAGACCGACTTCGGTCGCCTCAACATC 19968 Query 7685 ATGCTCAACCGCTGGATGCCGGCCGACGCGATCGGCATCGTGGACCT-GTCCGTCTGCGT 7743 ||||| ||||| | | ||| ||||| ||| ||||| || | | || | Sbjct 19967 ATGCTGGACCGCCAGCTCCCGCAGGACGCTCTCGCGATCGTCTCGCTGGAGCAGCTTC-A 19909 Query 7744 GCCCGTGTTCCTCGAAATCCCCGACAAGGGCGTCCTGTTCGCCGAACCGCTGGCGAAGAC 7803 ||| | |||||||| || || ||||||| | | |||| || ||||| |||||| Sbjct 19908 GCCGTTCTTCCTCGAGGTCGACGGCAAGGGCCACTTCTTCGAGGAGCCGCTCGCGAAGGT 19849 Query 7804 CGGGTCTTCGGAGAAGTACCAGCTGTACGGCGAGGTCGGCCTGGAGTACGGCCCCGAGA 7862 ||| || | || | ||||| ||||||||| ||||||| ||||||||| ||||| Sbjct 19848 CGGCGCTGCCGACCGCTCGCAGCTCTACGGCGAGATCGGCCTCGAGTACGGCAACGAGA 19790 >seq923 Length=16245 Score = 105 bits (116), Expect = 2e-18 Identities = 130/175 (74%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 31503 GCGCTGTGCCCGCAAACGGATCCCGACGTGTTCTTCCCCGAAAAGGGCGGCAGCACCAAA 31562 || || ||| |||| ||||| ||||| | |||||||||||| |||||||| ||| Sbjct 6880 GCTCTCTGCTCGCAGACGGACCCCGAGGCGTTCTTCCCCGAGAAGGGCGGATCGACCCGC 6939 Query 31563 GAAGCGAAAGCG-ATCTGTGGGCTGTGCGATGTCCGCAACGAATGCCTGGAGTACGCGTT 31621 || || || ||| ||||| ||||| |||||| ||||||||| || |||||| | Sbjct 6940 GACGCCAA-GCGCATCTGCTCCACCTGCGACGTCCGCGGCGAATGCCTCGACTACGCGCT 6998 Query 31622 GGCGCACGACGAACGATTCGGCATCTGGGGCGGCTTATCCGAGCGTGACCGGCGC 31676 | | |||||||||| ||||| ||||||||||| | |||||| || || ||| Sbjct 6999 CGAGAACGACGAACGCTTCGGTATCTGGGGCGGGCTGAGCGAGCGGGAGCGCCGC 7053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135519925993452