Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_026584.1 Length=109871 Score E Sequences producing significant alignments: (Bits) Value seq706 140 2e-28 seq332 116 3e-21 seq6499 100 2e-16 >seq706 Length=18769 Score = 140 bits (154), Expect = 2e-28 Identities = 214/302 (71%), Gaps = 11/302 (4%) Strand=Plus/Minus Query 97544 CGCCCCCACGGGCAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTC 97603 |||||||| |||||||| | |||||| ||| ||| ||||| | ||||| || || Sbjct 11039 CGCCCCCATCGGCAGGAACAGCCCGTCGCCCTGTCCGATGAGACGGTCGGCGCCCGGCTG 10980 Query 97604 GTCCAGGATCACCCGGCTATCGGTGAGTGATGCT-GTG---GCGAACGAGAGCCTAGACG 97659 ||| ||||| || || ||||||| ||| ||| ||||||| ||||| || | Sbjct 10979 GTCGAGGATGACGCGCGAGTCGGTGAC----GCTCGTGACCGCGAACGCGAGCCGCGAGG 10924 Query 97660 GCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGA 97719 ||||||||| ||||| || || ||||| || || ||| || ||||| || || || | Sbjct 10923 GCACGTTGGCCTTGATGAGACCCGTGACGACGTCGACGCTCGGACGCTGGGTGGCGAGCA 10864 Query 97720 CGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTT 97779 ||||||| || ||| || || || ||| | |||||| || || | ||||||| | Sbjct 10863 CGAGATGGATGCCGCTGGCCCGGGCGAGCTGCGTGATGCGAACGATCGAGTCCTCGACGT 10804 Query 97780 CTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGG 97839 | | | || ||||||||||||| ||||| |||||||| || |||| | ||||| Sbjct 10803 CGCGCGGGG---CGACCATCATGAGGTCGGCGAGCTCGTCGACGACGACCAGCAGGTAGG 10747 Query 97840 GG 97841 || Sbjct 10746 GG 10745 Score = 86.0 bits (94), Expect = 4e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 98069 CATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGGGG 98128 ||||||||| | |||||| |||||||| || ||||||| ||| || |||||||||||||| Sbjct 10457 CATCGAGTTCACGAAGCTCGACTTGCCGGAACCGGTGGAGCCCGCGACCAGCAGGTGGGG 10398 Query 98129 CATTTTGGCCAGGTT 98143 ||| || || ||||| Sbjct 10397 CATCTTCGCGAGGTT 10383 >seq332 Length=27903 Score = 116 bits (128), Expect = 3e-21 Identities = 141/188 (75%), Gaps = 7/188 (4%) Strand=Plus/Plus Query 97658 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 97717 ||| | ||||| ||||| ||||| |||| || || ||| ||| |||||||||||||| Sbjct 24708 CGGGATGTTGGCCTTGATCAGGCCGGTGATGACGTCGACGCTGGGACGCTGCGTCGCCAG 24767 Query 97718 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCG 97775 || || ||||| ||||| |||||||||||||| || | |||| | || ||| | ||| Sbjct 24768 GATCAGGTGAATGCCGGCCGCGCGCGCCTTCTGCGCCAGGCGGGCGATCAGTT--CTTCG 24825 Query 97776 ACTTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATG 97835 | || |||||| | ||||||| ||||| || || ||||||| || ||||||||| Sbjct 24826 A--TC-TTCTTGCCCACCACCATCATCAGGTCGGCCAGCTCGTCGATGACCACCACGATG 24882 Query 97836 TAGGGGAG 97843 ||| || Sbjct 24883 GTGGGCAG 24890 Score = 102 bits (112), Expect = 6e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 97947 TCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCATC 98006 || |||||||||||| || ||||| || || || | ||| | | | ||| | |||| Sbjct 25081 TCCGTGACCACCGGCGCCAGCAGGTGCGGAATGCCTTCGTAGACGCTCATTTCGAGCATC 25140 Query 98007 TTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAACC 98066 ||||||||||||| ||| || | | | | ||| ||| |||| || | Sbjct 25141 TTCGGGTCGATCAGGATCAGGCGGGTGTGCGAGGCGTCGGCCTTGTACAGCAGCGACAGG 25200 Query 98067 AGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGTGG 98126 | ||| | |||||| | ||||||||||||||||||| ||| |||||||||||||| Sbjct 25201 ATCATGGCGTTGATCCCGACCGACTTGCCCGATCCGGTGGTGCCCGCCACCAGCAGGTGC 25260 Query 98127 GGCATTTTGGCCAGGT 98142 ||||| |||||||||| Sbjct 25261 GGCATCTTGGCCAGGT 25276 >seq6499 Length=1589 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 97932 ACCGCCT-CGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGG 97990 ||||||| | ||||| ||||| |||||||| | || |||||||| |||| || Sbjct 700 ACCGCCTTCTTCGGG-TCGGTCACCACCGGGGCGAGGAGATGGGGGATGCCGTCATAGAT 642 Query 97991 GGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCG 98050 || ||| |||| |||||| || |||| |||||| ||| | | || || || || Sbjct 641 GGAGAGCTCCAGCATCTTGGGATCGACCATGATCAGCCGGCACTCCTCGGGCTTCAGCCG 582 Query 98051 GTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCC 98110 |||||||| || | | ||| | |||||| ||||||||||| ||||||| ||| Sbjct 581 GTAGAGCAGCGACAGGATCATGGTGTTGATCGCCACCGACTTGCCCGAGCCGGTGGTGCC 522 Query 98111 AGCCACCAGCAGGTGGGGCATTTT 98134 ||||| |||||||| ||||| || Sbjct 521 GGCCACGAGCAGGTGCGGCATCTT 498 Score = 96.9 bits (106), Expect = 2e-15 Identities = 181/263 (69%), Gaps = 15/263 (6%) Strand=Plus/Minus Query 97584 AGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAGTGATG----CTGT 97639 |||||||||||||| |||| |||||| ||||| ||| | || | ||| Sbjct 1162 AGCTGCTCGGCTCCCTGCTCGCTCAGGATGGTGCGGCTGTCGATCTTCGACGTCACCTG- 1104 Query 97640 GGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGA 97699 ||| |||| | | ||| | ||||| ||||| ||| |||| || ||||| || Sbjct 1103 ---GAAGGAGATGCGGGTCGGGAAGTTGGCCTTGATCGTGCCGGTGATCACGTCCACCGA 1047 Query 97700 GGGCCGCTGCGTCGCCAGGACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCG 97759 || ||||||||||||| || || || || ||||| ||||||||| |||| || | ||| Sbjct 1046 CGGGCGCTGCGTCGCCATGATCAGGTGGATGCCGGCGGCGCGCGCCATCTGCGCCAGGCG 987 Query 97760 GACAATGTTGGCCTCGACTTCTTTCTTGTAGCCGC--CCATCATGAGGTCTGCGAGTTCG 97817 || |||||| || |||| |||| ||||||| ||||| || | ||| Sbjct 986 CTGGATCGCCCCCTCGATGTC---CTTG--CCCGCCACCATCATCAGGTCGGCCATCTCG 932 Query 97818 TCGACCACTACCACGATGTAGGG 97840 ||||| | |||||||||||||| Sbjct 931 TCGACGATCACCACGATGTAGGG 909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351428136699448