Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq907 129 6e-25 seq815 111 2e-19 seq455 109 6e-19 seq2031 102 9e-17 seq1912 86.0 7e-12 >seq907 Length=16333 Score = 129 bits (142), Expect = 6e-25 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 ||||| | ||||| || || ||||| || ||||| || ||||||||||| || || ||| Sbjct 11200 TTTGCGGAGCGTCTGATTGCGTTTGCGTGTGTGGAGGGCATCTTCTTCTCCGGGTCCTTC 11259 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || | || ||||||||||| ||||| || |||||||| ||||| | |||||| |||||| Sbjct 11260 TGCTCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCACTTTCTCAAACGAG 11319 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCA 60118 || || |||||||||||||| || Sbjct 11320 CTCATCAGTCGGGACGAGGGCCTGCA 11345 >seq815 Length=17358 Score = 111 bits (122), Expect = 2e-19 Identities = 219/320 (68%), Gaps = 7/320 (2%) Strand=Plus/Minus Query 19388 ATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAAC 19447 ||||| || || ||||| | | | | || | ||||| | || ||| ||||| || Sbjct 15074 ATCAAGGGCACCAACGGCGAAAGCCAGGGCGTGGTCCCGTTCCTGAAGGTCGTCAACGAC 15015 Query 19448 ACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTC 19507 || ||| | || |||||||| |||||| ||||||||| || || || |||||| Sbjct 15014 ACCGCCGTGGCGGTGAACCAGGG---CGGCAAGCGCAAGGGCGCGGTCTGCACCTACCTG 14958 Query 19508 GAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAG 19567 || | |||||| |||| || ||| ||||||||||||||| |||| || |||||| Sbjct 14957 GAATCGTGGCACCTGGACATCGAGGAATTCCTCGAACTGCGCAAGAACACCGGCGACGAG 14898 Query 19568 GAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAG 19627 ||| | |||| | |||||| |||||||| ||||| |||||| || Sbjct 14897 CGTCGTCGCACCCACGACATGAACACGGCGAACTGGATTCCCGACCTGTTCATGAAGCGC 14838 Query 19628 GT--TGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCG 19685 || || ||||| || |||||| |||| | | ||| ||| ||||| | ||| | || Sbjct 14837 GTCATG-GAAGG-CGGCGAATGGACCCTGTTCTCGCCGTCCGACTGCCCCGACCTGCACG 14780 Query 19686 ACGTCTACGGCGAGGCGTTC 19705 || |||||| |||| ||| Sbjct 14779 ACAAGTACGGCAAGGCTTTC 14760 Score = 91.5 bits (100), Expect = 2e-13 Identities = 331/513 (65%), Gaps = 10/513 (2%) Strand=Plus/Plus Query 79299 GAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCA 79358 |||||||| || || ||| ||||| | ||||| ||| ||| | | |||| ||| Sbjct 14760 GAAAGCCTTGCCGTACTTGTCGTGCAGGTCGGGGCAGTCGGACGGCGAGAACAGGGTCCA 14819 Query 79359 GTCCTCGTCCTTCTCA--ACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAG 79416 || || ||||| || || || |||||| ||||| || ||||| |||||| Sbjct 14820 TTCGCCG-CCTTC-CATGACGCGCTTCATGAACAGGTCGGGAATCCAGTTCGCCGTGTTC 14877 Query 79417 AGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATG 79476 | |||| || || ||||||||| |||| ||||| ||||| || ||| | Sbjct 14878 ATGTCGTGGGTGCGACGACGCTCGTCGCCGGTGTTCTTGCGCAGTTCGAGGAATTCCTCG 14937 Query 79477 ATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCC 79536 ||||| |||||||| ||||| ||| || || || ||||||||||| ||||||| Sbjct 14938 ATGTCCAGGTGCCACGATTCCAGGTAGGTGCAGACCGCGCCCTTGCGCTT---GCCGCCC 14994 Query 79537 TGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCG 79596 ||||| || | ||| |||| ||||| || || | || || | ||| | | Sbjct 14995 TGGTTCACCGCCACGGCGGTGTCGTTGACGACCTTCAGGAACGGGACCACGCCCTGGCTT 15054 Query 79597 ACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCG 79656 ||||||| || || ||||| | | | ||| || | | |||| | | || Sbjct 15055 TCGCCGTTGGTGCCCTTGATGTGGCTGCGCAGCGCGCGCACCGGGGTCCAGTCGTTGCCC 15114 Query 79657 ATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCG 79716 | ||| |||| |||||| | ||||| ||||||| | ||||||||||| || Sbjct 15115 AGGCCGCCGGCGTACTTGGCCAGCAGCGCGTTTTCCTTGATGGCGTCGTAGATGCCTTC- 15173 Query 79717 ATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCG 79776 | |||||| | | | |||| |||| ||||| ||| | || || || Sbjct 15174 --CAGGTCGTCGGAGACGGTGGTCAGGTAGCACGACGACAGCTGCGAGTGCAGGGTGCCC 15231 Query 79777 GCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG 79809 | |||||| || ||||| |||| | | ||||| Sbjct 15232 GAGTTGAACAGCGTCGGGGTCGAGCTCATGAAG 15264 >seq455 Length=23823 Score = 109 bits (120), Expect = 6e-19 Identities = 208/301 (69%), Gaps = 9/301 (3%) Strand=Plus/Minus Query 166169 ACGCG-CAAGGTTGAACGTCTGATCCTGACGCGACCGGCCGT-GAGCGTCGAGGAGCAGC 166226 ||||| || ||| | || ||| | ||||| || ||||| || ||| | || || | || Sbjct 12574 ACGCGACACGGTGCAGCGCCTGGTGCTGACACGCCCGGCGGTCGAG-GCCGGCGAACGGC 12516 Query 166227 ACGGGTTCCTTCCCGGCAGTCTCGAGCAGAAGATGGAGCCGTGGACTCGACCCATGTTCG 166286 || ||||| |||||| || | ||||||| | || |||| || || ||| || Sbjct 12515 TGGGCTTCCTGCCCGGCGACCTGGCGCAGAAGGTCGATCCGTACCTGCGCCCGCTGTACG 12456 Query 166287 ACGCCCTGTA---CCGGTACATGAGCCCTAAGAAGGTTCGGGATCTCATGGAAAATCACG 166343 ||||||| || || | ||| || ||||||| | | || | || || || Sbjct 12455 ACGCCCTCTATGACCTG---ATGGGCTTCGAGAAGGTGCAGCGCCTGTTCGAGAAGCAGA 12399 Query 166344 TCATCGAGATCTGTCCTCTGGCGTACATGCGCGGTCGGACGTTCGACAACGCCTGGATTA 166403 |||||||||| || ||||| ||||||||||| || ||| | || |||||| | | Sbjct 12398 CCATCGAGATCGCGCCGCTGGCCTACATGCGCGGCCGCACGCTGAACCACGCCTTCGTCA 12339 Query 166404 TCGGGGATGAGATGCAGAACTCGACGCCGGGTCAGATGAAGATGCTTCTGACCCGGATCG 166463 || ||| ||| ||||||| | ||||||| |||||||||||| | ||||| || |||| Sbjct 12338 TCCTGGACGAGGCGCAGAACACCACGCCGGAACAGATGAAGATGTTCCTGACGCGCATCG 12279 Query 166464 G 166464 | Sbjct 12278 G 12278 >seq2031 Length=8562 Score = 102 bits (112), Expect = 9e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 78526 CGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGG 78585 ||||| | ||||||||| | ||||| |||||||| ||| ||||| |||| ||||||| Sbjct 5114 CGGCGGACGTAGATGTTTGAGGTGTAGGGCTCGAAGCACTCATTGTTGCCCAAGATCTGG 5173 Query 78586 GCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGC 78639 ||| |||||| ||||||||||| ||||||||||| || || | ||||||| Sbjct 5174 CTGGTGCTGGCGGTGGGCATGGGTGCCACCAGTAGAGAGTTACGCACACCATGC 5227 >seq1912 Length=9087 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 59931 AAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTTGCACAACGTCTCAT 59989 ||||||| ||||| ||| ||||||| ||| | | ||| | |||||| | || || | Sbjct 5073 AAAGCAGCTTGGGCAATGAAGTGGATAGAGAGCAGCAGC-TGTTTTGCAGAGCGCCTGGT 5015 Query 59990 AGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCT 60049 || | || |||||||| || || |||||| || || |||||||| || |||||||| Sbjct 5014 GGCGTACGCGTGCGTGGAGGGCATACACTTCTCAGGATCTTTCTGTGCCATCTTCTGGCT 4955 Query 60050 CAAAAAGCGTGGCCTCATGCCGGG 60073 ||| ||||| ||||||||||| Sbjct 4954 CAAGAAGCGGCAGCTCATGCCGGG 4931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548469954376560