Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq7728 123 3e-23 seq1176 122 1e-22 seq1162 122 1e-22 seq12 120 3e-22 seq907 116 4e-21 seq585 113 5e-20 seq113 109 6e-19 seq73 100 3e-16 seq88 91.5 2e-13 seq1545 84.2 2e-11 >seq7728 Length=1087 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || || |||||| | | Sbjct 48 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTAGATGTTGAGCCCAGC 107 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||| || || ||||||||||| || || || || || ||| Sbjct 108 GACACAATCGAGAATGTGAAGCAAAAGATCCAGGACAAGGAAGGGATCCCCCCTGATCAG 167 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || ||||| | || || || | ||||| || Sbjct 168 CAGCGCCTCATCTTTGCGGGCAAGCAGCTGGAGGACGGCCGCACGCTTTCGGACTACAAC 227 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||| ||||| | || || || |||| || || || ||| Sbjct 228 ATTCAGAAGGAGTCCACATTGCACCTGGTTCTGCGCCTGCGAGGCGGA 275 >seq1176 Length=13603 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| |||||||| ||||||||||| || |||||||| || ||||| || Sbjct 12631 CAGGACAAGGAGGGCATTCCTCCTGACCAGCAGCGCCTGATTTTTGCGGGCAAGCAGCTG 12572 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||||| || ||||| || ||||| || |||| ||||| ||||| || || || || Sbjct 12571 GAGGATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTG 12512 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || || || || Sbjct 12511 CTGCGCCTGCGTGGCGG 12495 Score = 116 bits (128), Expect = 4e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || || || ||||||||||| || |||||||| || ||||| || Sbjct 13390 CAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTGATTTTTGCGGGCAAGCAGCTG 13331 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||||| || ||||| || ||||| || |||| ||||| ||||| || || || || Sbjct 13330 GAGGATGGCCGCACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTG 13271 Query 27616 TTGCGTCTTCGCGGTGG 27632 |||| || ||||| || Sbjct 13270 CTGCGCCTGCGCGGCGG 13254 >seq1162 Length=13745 Score = 122 bits (134), Expect = 1e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || |||||||||||||| |||||||| |||||||||||||| || ||||| || ||||| Sbjct 13745 ATGCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGTCTGATCTTTGCGGGCAAGCAG 13686 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 || ||||||| || ||||| || ||||| || |||||||||| ||||| || || || Sbjct 13685 CTTGAGGATGGGCGCACCCTGGCTGACTACAACATCCAAAAGGAGTCCACCCTCCACCTG 13626 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 || | || || || || || Sbjct 13625 GTGCTTCGCCTGCGTGGCGG 13606 >seq12 Length=84225 Score = 120 bits (132), Expect = 3e-22 Identities = 96/116 (83%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || |||||||||||||| |||||||| |||||||||||||| || ||||| || ||||| Sbjct 185 ATGCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGTCTGATCTTTGCGGGCAAGCAG 126 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 || ||||||| || ||||| || ||||| || |||||||||| ||||| || || Sbjct 125 CTTGAGGATGGGCGCACCCTGGCTGACTACAACATCCAAAAGGAGTCCACCCTCCA 70 >seq907 Length=16333 Score = 116 bits (128), Expect = 4e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 64707 GTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATT 64766 ||||| ||||||| || ||||| |||||||| || || ||||| || ||||| || Sbjct 11199 GTTTGCGGAGCGTCTGATTGCGTTTGCGTGTGTGGAGGGCATCTTCTTCTCCGGGTCCTT 11258 Query 64767 CTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGA 64826 ||| || || |||||||| || ||||| || || ||||| || || | || || ||||| Sbjct 11259 CTGCTCCATCTTCTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCACTTTCTCAAACGA 11318 Query 64827 GCTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865 ||| ||| |||||||||||| || ||| ||| ||||| Sbjct 11319 GCTCATCAGTCGGGACGAGGGCCTGCACACAGACTTTGC 11357 >seq585 Length=20866 Score = 113 bits (124), Expect = 5e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||||||||| ||||||||||| || |||||||| || ||||| || ||||||| || Sbjct 795 GGAATTCCTCCTGACCAGCAGCGCCTGATTTTTGCGGGCAAGCAGCTGGAGGATGGCCGC 736 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| || ||||| || |||| ||||| ||||| || || || || |||| || ||| Sbjct 735 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTGCGC 676 Query 27628 GGTGG 27632 ||||| Sbjct 675 GGTGG 671 >seq113 Length=41445 Score = 109 bits (120), Expect = 6e-19 Identities = 216/325 (66%), Gaps = 0/325 (0%) Strand=Plus/Plus Query 24584 CGAGGTCTATAACCTAGGTGCCCAGTCACACGTCAAGCTGTCGTTTGACCAACCCGAGTA 24643 |||| |||| ||||| | || ||| |||||| | ||||||| || | || ||||| Sbjct 22888 CGAGATCTACAACCTGGCGGCGCAGAGCCACGTCGGGGTGTCGTTCGAAGAGCCGGAGTA 22947 Query 24644 CACGGCCAACGTGGATGCTCTAGGCACCCTAAGAATTCTTGAAGCAATTCGCNNNNNNNN 24703 ||| ||||||| || | || |||||||| | | || ||||| || ||| Sbjct 22948 CACCGCCAACGCCGACGGCCTGGGCACCCTGCGCCTGCTGGAAGCCATCCGCATCCTCAA 23007 Query 24704 NNNNNNNTTGAAATTCAGATTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCA 24763 || | || || ||||| || ||| ||| || |||||| Sbjct 23008 GCTGGAGGACAAGGCGCGCTTCTACCAGGCCTCGACCTCCGAGCTGTACGGGCTGGTGCA 23067 Query 24764 GGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAA 24823 ||| ||||| ||| || | ||| || || ||||| || ||||| || | | | || Sbjct 23068 GGAAACGCCGCAGCGCGAAAGCACGCCGTTCTATCCCCGCAGCCCCTACGCCGCGGCCAA 23127 Query 24824 GGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAA 24883 | ||| ||| |||||||| | | ||||||||| |||||| | || || ||||| ||||| Sbjct 23128 GCTGTACGCCTACTGGATCAGCGTGAACTACCGCGAGGCCTACGGCATGTATGCCTGCAA 23187 Query 24884 CGGAATTCTGTTCAACCATGAGTCG 24908 ||| || ||||||||||| || ||| Sbjct 23188 CGGGATCCTGTTCAACCACGAATCG 23212 >seq73 Length=47289 Score = 100 bits (110), Expect = 3e-16 Identities = 108/142 (76%), Gaps = 1/142 (1%) Strand=Plus/Minus Query 27496 CAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTC 27555 |||||||||||||| || ||||| ||||||||||| |||| || | || ||||| || Sbjct 32536 CAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGCTTAATCTTCACGGGCAAGCAGCTT 32477 Query 27556 GAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 ||||||| || ||||| || ||||| | |||| || || ||||| ||||| || || Sbjct 32476 GAGGATGGCCGCACCCTGGCCGACTACAGCATCCAGAAAGAGTCCACGCTTCACCTGGTA 32417 Query 27616 TTGCGTCTTCGCGGTGGACAAG 27637 |||| || || || || |||| Sbjct 32416 CTGCGCCTGCGTGGCGG-CAAG 32396 >seq88 Length=44669 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 31958 TCAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATAT 32017 || |||| || || ||| || ||| ||||||||| ||||| |||||||||| | || | Sbjct 31597 TCGAGCGCTCTATCCCAAACATGGTGGACGGCCTGAAGCCGGGACAGCGCAAGATCATGT 31538 Query 32018 ACGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACG 32077 |||||| | ||| || | || |||| | ||||||||||||||| | || |||| Sbjct 31537 TTGCCTGCTTTAAGCGCAATTTAAAGAATGACGTCAAGGTGGCGCAGCTGGCAGGATACG 31478 Query 32078 TGGCAGAGCA 32087 |||||||||| Sbjct 31477 TGGCAGAGCA 31468 >seq1545 Length=10919 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || |||||||| || || || ||||| ||||| Sbjct 10552 ATGCAGATTTTCGTCAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTGGAGTCTTCA 10611 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | || | ||| |||||||||| ||||||||||||||||| Sbjct 10612 GACACAATCGAGAATGTGAAGGCTAAGATTCAGGACAAGGAGGG 10655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570253376088880