Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq313 214 7e-51 seq75 206 1e-48 seq1581 158 5e-34 seq424 98.7 4e-16 seq240 95.1 5e-15 >seq313 Length=28640 Score = 214 bits (236), Expect = 7e-51 Identities = 478/703 (68%), Gaps = 21/703 (3%) Strand=Plus/Minus Query 23939 GGCCCAGTACGCCATACCACGGTAGATAGCGGTGAGGTCGCGCAGCAGCTCCCAGGCCCC 23998 |||||| || ||||| || ||| | || | || || ||| ||| || | |||| | Sbjct 19877 GGCCCAATAAGCCATGCCGCGGAAAATGGAGGCGAAGTCCTGCACCACCCGGTAGGCGTC 19818 Query 23999 GGCGCGGCT-TTGCAGGTTCAGGTTGCAGGTGTGTCGCGGCTCCTGGCCACCCTTCCCAT 24057 ||| || || |||||||| | |||||||||| ||||| |||| || || || | Sbjct 19817 GGC-CGCCTGTTGCAGGTAGACGTTGCAGGTGAAGCGCGGTTCCTTTCCGCCGAAGCCGT 19759 Query 24058 CCGGCACCAACTGGTCGCAGTACTGGGAAATCCGGTACATCTCCCAGCGATCGA-CCATC 24116 | |||| || |||||| || || ||| |||||| |||| || | ||| | Sbjct 19758 CATCGACCATCTCGTCGCAATAGCGGCCGATCTGGTACAGGCCCCACTTGTCCAGCCAGC 19699 Query 24117 CAAGCCTTGATGCGTTTACCCACACCGAAGCGATCGTTGGTCACGATGTCGTAGGTGTGC 24176 | ||| | ||| | |||| || |||| |||||| | | || ||||||| | Sbjct 19698 CC-GCCGGCACGCGCGTGCCCAGGCCATAGCGGTCGTTGCTGATGAGGTCGTAGAACACC 19640 Query 24177 CAGACCGGGTTGTCGGTCCAGGCCTGTTTCATCGTGCCGTCCCAGATGCCGAGGTAG--G 24234 ||| ||||||||| |||||||||| | || | ||||||||||| | |||| ||| | Sbjct 19639 CAGGCCGGGTTGTTGGTCCAGGCCAGCTTGAAGGTGCCGTCCCACACGCCGTCATAGCGG 19580 Query 24235 CCCGGGTCTCCGGATCGTAATTGCTCGGCACTTGGACCTTCCGCCCGCGGCAGTCGACTG 24294 | | |||| ||| | || ||| |||||| ||| | || ||||| || | | Sbjct 19579 CGCAGGTC--CGGGTGATAGTTGGACGGCACCCGGATGATGCGGCCGCGCACGTGGTACG 19522 Query 24295 TGACAGCCGGAATGTTGCTGAACTGCTCTGCGCTGAACTCGACGTACAGCAGGGCCGTGT 24354 | | |||||| | ||||||| ||| || || || | || ||| |||| Sbjct 19521 CGCGGGTGGGAATGCTCTGGAACTGCGACGCGTCGATCTTGATGCCCACCAGCGCCGACA 19462 Query 24355 TCGGGTAGCGCAGCTTCGCGTCGATCACCTCGGTGTAGCCGGCGATCAGCATGGTG---T 24411 |||| ||||||||||| ||||||| | ||||||| | | | || || |||| | Sbjct 19461 TCGGATAGCGCAGCTTGGCGTCGACGATCTCGGTGA---CCGTGTCCACCACGGTGCGGT 19405 Query 24412 CGGCGATGCGGTTGTTGTTCTGGTTCGGCGTCAGGCGGCGGACGCGCACCTGCCAGCCAT 24471 | | |||| |||| |||| ||| ||||||| |||||| |||||||| |||||| | Sbjct 19404 CCGAGATGGTGTTGCTGTTGGCGTTGGGCGTCACGCGGCGCACGCGCACGGTCCAGCCCT 19345 Query 24472 TGGTGGCCGC-CGGCAGGTCGATCCGGCGGGAACGCTCGTAGCGGGTGGTGGTCTTGCCA 24530 || | ||| |||||| ||||| ||| | || ||| ||||| |||||||||||| Sbjct 19344 -GGCGCGCGCGCGGCAGCTCGATGCGGTGCGAGCGCGTATAGCGCTGGGTGGTCTTGCCG 19286 Query 24531 TCGACGGCC-TCGCGCAGCACCTCCTGATAGGCGCCGCCGTCGGTGGCCAGATCTACGGC 24589 |||| || ||| ||||||| ||| ||| || ||||||||||| ||| || | | Sbjct 19285 TCGAACGCGGTCGA-CAGCACCGTCTGGTAGCCGGCGCCGTCGGTGTTCAGCTCGATCAC 19227 Query 24590 ATATTCGATCCGGTACCCGCCGATGTTGCCG---TTGGTGTCC 24629 ||||||| ||||| ||| ||||| |||| ||||||||| Sbjct 19226 GTATTCGACGCGGTAGCCGTTGATGTCGCCGTTCTTGGTGTCC 19184 >seq75 Length=46716 Score = 206 bits (228), Expect = 1e-48 Identities = 485/721 (67%), Gaps = 27/721 (4%) Strand=Plus/Minus Query 4864 AACTGGTCGAAGTACCAGCCAAAGAAACCGCTCTGCAAGTCTACTCGGCAGACAATGGCC 4923 |||| | |||| | || || | |||||||| ||| | || || || || |||| Sbjct 830 AACTCGCCGAACTGCCGCCCCAGGAAACCGCGCTGGAGGTGTATTCCAAGCCCAGCGGCC 771 Query 4924 TGGATCCATTCCTGGCCAAGATTCGCGAAGAGATCGACGGCTTCGTGCCGGATGTGACCA 4983 |||| || | ||||||||||| |||| || | |||| |||||| || || | | Sbjct 770 TGGAGCCCTGGCTGGCCAAGATCCGCGCCGAAGTGTCCGGCCACGTGCCTGACATGTCGA 711 Query 4984 CTCGCAAGGGCCGAGAGGCAATCGCTTCCATCGCCTACAAGGTAGCCCGC---TCCAAGA 5040 | || ||||| ||||| | ||| | | || | |||||| |||| || |||| Sbjct 710 CCAAGAAAGGCCGTGAGGCCACCGCCAGCCTGGCGTTCAAGGT---CCGCAAATCGAAGA 654 Query 5041 CGGCGCTGGACAACGTGGGCAAGGAATTGGTCGCTGAGCTGAAGGAGGTCCCGAAGAAGA 5100 | ||||||||| | |||||||| | |||||| || || ||||| ||||| ||| | Sbjct 653 CCGCGCTGGACGCCCTGGGCAAGCAGCTGGTCGACGAACTCAAGGACGTCCCCAAGCGCA 594 Query 5101 TCGATGCCGAGCGTAAGCGGATGCGCGATCTGTTGGATTCCTGGCAGGCCGAAG---TGC 5157 |||| || ||||| ||||| |||||||| |||| | || |||||||| ||| Sbjct 593 TCGACGCGGAGCGCAAGCGCATGCGCGACACCCTGGACGC---GCTGGCCGAAGAGGTGC 537 Query 5158 GCAGTCCGTTGACCGAGTGGGAAGAGGCTGAAGCGGC--GCGGGTTGCGCGTC-ATCAGG 5214 || ||| |||||| ||||||| || || | || ||| | |||| | | |||| Sbjct 536 GCGCGCCGCTGACCGCATGGGAAGCCGCCGAGGAAGCACGCGAGCAGCGCCACCAGCAGG 477 Query 5215 GCGAGATCGACAAGATAAACCTTCGC-CTG--GAATGCCGCGATCTGGACTCTAATGAAC 5271 | | |||| | | ||| ||| | | || |||||| ||||| | | || | Sbjct 476 GTG---TCGAGTGGTTCCGCCTGCGCGCCGACGAGCACCGCGACCTGGATGCGACCGAGC 420 Query 5272 TCAAAGCCAACATCGCTTGGTTGGAAGGCCTGGCCATAAGTGAAGCCTGGGAAGAGTTCG 5331 | || | ||||| | || | | || ||| | || ||||||| || | || Sbjct 419 TGCGCGCGACCATCGAAGAGGTGAATGCCCGCGCCGTGGATGCGTCCTGGGAGGAATACG 360 Query 5332 AGGCAGAGGCTGCTCGCGCCAAAGATAAGGCTTTG-ATCGCTCTCCGAG--AAGCCCTGG 5388 |||| ||||| |||| ||| | || | || || | || ||||||||| Sbjct 359 AGGCCGAGGCGCACCGCGTCAAGGCCCGCGCCCAGGAT---TCCCTGACGCAAGCCCTGG 303 Query 5389 TTGCCCGTGAGAAGTTCGAAGCCGAGCAGGCCGAACTGGAACGCCTGCGCGCCGAAGCAG 5448 || || ||||||| ||| ||||||||||||||||||| |||||||| |||| | || Sbjct 302 CGGCGCGCGAGAAGTACGACGCCGAGCAGGCCGAACTGGCGCGCCTGCGTGCCGCTGAAG 243 Query 5449 CAGCACGCCAGCAGAAAGAGCGCGAGGAGCGCATTGCCCGCGAAGCAGCAGAGCAGGCAC 5508 | | ||| ||||| || || || |||||||| ||||||||||| || |||| || | Sbjct 242 CCGAGCGCGCACAGAAGGAACGTGAAGAGCGCATCGCCCGCGAAGCGGCCGAGCGCGCCC 183 Query 5509 GGCGTCAGGAAGAGGCCAAGGCCCAGGCAGAACGCGACGCCGCAGTACGCCGTGAAGCCG 5568 ||| | | |||| || |||||||| || ||||||||||| | ||||| ||||||| Sbjct 182 AGCGCGAAGCAGAGACCCGCGCCCAGGCCGAGCGCGACGCCGCCGCCCGCCGCGAAGCCG 123 Query 5569 A 5569 | Sbjct 122 A 122 >seq1581 Length=10720 Score = 158 bits (174), Expect = 5e-34 Identities = 234/331 (71%), Gaps = 12/331 (4%) Strand=Plus/Plus Query 7282 GTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCC 7341 ||||||||||||||||| || || ||| | ||| | ||||||||| |||||||| ||| Sbjct 10296 GTTAACAAAGTCATTCTCGTGGGCAACCTGGGTCGCGACCCGGAAGTCCGCTACAGCCCC 10355 Query 7342 AACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAG 7401 |||| || | |||||| || ||||||| | | | ||||||||||||| Sbjct 10356 GACGGGGCCGCAATCTGCAACATGTCCATCGCCACGACCTCCACCTGGAAGGACAAGGCA 10415 Query 7402 ACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCCTGGCG 7461 | ||| | | | ||| |||| | ||||||||||| | | | |||||||| Sbjct 10416 TCGGGCGAACGCCGCGAAGAAACCGAATGGCACCGCGTGGTCATGTACAACCGCCTGGCC 10475 Query 7462 GAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCCTGCGC 7521 || ||||||||||| |||||| ||||| | ||||||| |||| ||| ||||| Sbjct 10476 GAAATCGCCGGCGAATACCTGAAGAAGGGCCGCTCGGTCTACATCGAGGGCCGCCTGAAG 10535 Query 7522 ACCCGCAAGTGGCAGGCTCAGGA---CGGCCAGGACCGATACACCACCGAGGTAATCGTC 7578 |||||||||||||| | |||| |||| ||||| |||| |||||| ||||||| Sbjct 10536 ACCCGCAAGTGGCAAGACAAGGACACCGGCGCTGACCGCTACAGCACCGA---AATCGTC 10592 Query 7579 GACATGCACGGACAGATGCAGATGCTTGGCG 7609 | || |||||||||||||| |||| Sbjct 10593 G------CCGACCAGATGCAGATGCTGGGCG 10617 >seq424 Length=24479 Score = 98.7 bits (108), Expect = 4e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 5766 CGCGAAGCCGACAAGGCGCACAAGAAAGCCATCAACAACGAAGCGCTGGCGGCTCTTATC 5825 ||||| |||||||||||||||||| | ||||||| | || |||| || || || Sbjct 24372 CGCGAGGCCGACAAGGCGCACAAGGCAAGCATCAACCGCACCGCCCTGGATGCCTTTGTC 24313 Query 5826 GCCGGTGGCATGCCCGAGGAATGCGCCAAGCAGGCGATCACCCTGATCGCTCAGCGCAAG 5885 | |||||||||||||| ||||||||||||||| |||| |||||||| || || Sbjct 24312 CTGGCCGGCATGCCCGAGGACTGCGCCAAGCAGGCGGTCACGCTGATCGCCAAGGGCGCC 24253 Query 5886 GTTCCTCACATCACGATCAACTATTGAGG 5914 | || ||||| |||| ||||||||| Sbjct 24252 ATCCCCAACATCCGTATCACCTATTGAGG 24224 >seq240 Length=32197 Score = 95.1 bits (104), Expect = 5e-15 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 53672 TAGACTTCATCGCGGTACACGAACATGACGATGTCGGCGTCTTGCTCAATGGCGCCGGAC 53731 ||||| || |||||||| | ||||| || | ||||||||| || || |||||||| || Sbjct 9147 TAGACCTCGTCGCGGTAGATGAACAGGATCACGTCGGCGTCCTGTTCGATGGCGCCCGAT 9088 Query 53732 TCGCGCAGGTCGCTGAGGACCGGACGCTTGTCGGGGCGAGACTCGCACCCTCGGTTTAGC 53791 |||||||||||||| | || |||||||||| ||| || ||| | |||||| ||| Sbjct 9087 TCGCGCAGGTCGCTCATCACGGGACGCTTGTTGGGACGCTGCTCCAGGCTTCGGTTCAGC 9028 Query 53792 TG 53793 || Sbjct 9027 TG 9026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194800694489478