Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq455 136 2e-27 seq41 89.7 2e-13 >seq455 Length=23823 Score = 136 bits (150), Expect = 2e-27 Identities = 247/357 (69%), Gaps = 6/357 (2%) Strand=Plus/Minus Query 5914 CAGCGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAGCTCGGCTTCCTGCCC 5973 |||||||| || | || || || || || ||||| | || ||| |||||||||||| Sbjct 12561 CAGCGCCTGGTGCTGACACGCCCGGCGGTCGAGGCCGGCGAACGGCTGGGCTTCCTGCCC 12502 Query 5974 GGCACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTGGACGCGGTGATCGAC 6033 ||| ||| ||||| | | || ||||| |||| || ||||| | ||| Sbjct 12501 GGCGACCTGGCGCAGAAGGTCGATCCGTACCTGCGCCCGCTGTACGACGCCCTCTATGAC 12442 Query 6034 CTGGTCGGCC-CGACGATGACGAAGCGCCTCCTCGAGTCGCG--CCAGCTGGAGGTCGCC 6090 ||| | ||| ||| || | | ||||||| ||||| || ||| | ||| |||| Sbjct 12441 CTGATGGGCTTCGA-GAAGGTGCAGCGCCTGTTCGAGAAGCAGACCATC--GAGATCGCG 12385 Query 6091 CCGCTGGCCTACATGCGAGGCCGGACGTTCAACGACACGTACATCGTCGCTGACGAGATG 6150 ||||||||||||||||| ||||| ||| | ||| || | | | || || |||||| | Sbjct 12384 CCGCTGGCCTACATGCGCGGCCGCACGCTGAACCACGCCTTCGTCATCCTGGACGAGGCG 12325 Query 6151 CAGAACGCCACCCCGCGCCAGACCGCGCTGCTGGTGACCCGCCTGGGCTTCGGGACGAAG 6210 |||||| |||| ||| |||| | || | |||| ||| | |||||||| | ||| Sbjct 12324 CAGAACACCACGCCGGAACAGATGAAGATGTTCCTGACGCGCATCGGCTTCGGCAGCAAG 12265 Query 6211 GCCGTCCTGAACGGTGACCCGGCCCAGTGCGACCTGCCGCCCGGCAAGGGCAACGGC 6267 |||||| | | ||| |||||| | ||| |||||||||| |||| ||| | |||| Sbjct 12264 GCCGTCATCACCGGCGACCCGTCGCAGGTGGACCTGCCGCGCGGCCAGGAAAGCGGC 12208 >seq41 Length=57461 Score = 89.7 bits (98), Expect = 2e-13 Identities = 177/257 (69%), Gaps = 9/257 (4%) Strand=Plus/Plus Query 5917 CGCCTCGTCATCACCCGGCCCGCCGTTGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGC 5976 ||| || || | || ||||||||||| ||||| | ||| |||||| ||||| ||||| Sbjct 11759 CGCATCATCCTGACGCGGCCCGCCGTCGAGGCGGGGGAGCGGCTCGGTTTCCTCCCCGGA 11818 Query 5977 ACTGTGGACGAGAAGATGGCACCCTACCTCACCCCGATGCTGGACGCGGTGATCGACCTG 6036 || | ||| ||||| | || || || ||| | |||||| | | ||| || Sbjct 11819 ACCCTCACCGACAAGATCGACCCGTATCTTCGGCCGCTCTACGACGCGCTCAACGAGATG 11878 Query 6037 GTCGGCCCGACGAT---GACGAAGCGCCTCCTCGAGTCGCGCCAGCTGGAGGTCGCCCCG 6093 | | ||| ||| | |||||| || | | |||| || | | |||||||| ||| Sbjct 11879 ATGGACCCCGAGATCGTGCCGAAGC---TCATGGCGTCGGGCACGATCGAGGTCGCGCCG 11935 Query 6094 CTGGCCTACATGCGAGGCCGGACGTTCAACGACACGTACATCGTCGCT-GACGAGATGCA 6152 || ||||||||||| || || ||| | |||||| ||| | | || ||| |||||| || Sbjct 11936 CTCGCCTACATGCGCGGGCGCACGCTGAACGACTCGTTCGTGGT-GCTCGACGAGGCACA 11994 Query 6153 GAACGCCAC-CCCGCGC 6168 |||| | || |||| || Sbjct 11995 GAACACGACTCCCGAGC 12011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191469810913920