Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq2332 253 3e-62 seq1741 219 5e-52 seq5501 196 6e-45 >seq2332 Length=7536 Score = 253 bits (280), Expect = 3e-62 Identities = 439/632 (69%), Gaps = 7/632 (1%) Strand=Plus/Plus Query 182780 GTTGATAAAAATCCTGTCCCTGTAAGCACTGAAAAGTGGGGGAAACCAGG--ATTCTTTG 182837 |||||| |||||| || || || |||||| |||| |||||||| ||| || Sbjct 596 GTTGATCGAAATCCGGTAGCTACAAATTTTGAAAAATGGGCTAAACCAGGTCATTTTTCA 655 Query 182838 ATAGGTCTTTAGCAAAAGGACCTAAA-ACAACCACATGGATATGGAATTTACACGCAGAT 182896 | ||||| ||||||| | || ||||| || ||||| ||||||||||| || | Sbjct 656 CGAACTCTTT--CAAAAGGTTCCAACTACAACAACGTGGATTTGGAATTTACATGCTAAC 713 Query 182897 GCTCATGATTTTGATAAGCATTCTAGTGATCTGCAAGAGAATTCAAGAAAAATATTTGCT 182956 || ||||||||||||| || | || ||||| |||| |||| ||||||| | ||| | Sbjct 714 GCACATGATTTTGATACACAAACAAGCGATCTTGAAGA-AATTTAAGAAAAGTTTTTAGT 772 Query 182957 GCACACTTTGCTCATCTAGGTATCATCTTTGTATGGATGA-GCAGTTTCTTCTTTCAAGG 183015 ||||| |||| ||| || ||||| |||||| | ||| | | | | | | || || || Sbjct 773 GCACATTTTGGTCAGCTCGGTATTATCTTTATTTGGTTTAAGTGGAATGTATTTCCATGG 832 Query 183016 TGCTAGGTTTTCAAACTATACAGGATGGTTGGCAGACCCAACTCATGTAAAACCTGGTGC 183075 ||| | |||||||| ||| || ||||| |||| ||||| ||| | ||||| |||| Sbjct 833 TGCACGTTTTTCAAATTATGAAGCGTGGTTAACAGATCCAACACATATTAAACCAAGTGC 892 Query 183076 TCAAGTGGTTTGGCCTATACTTGGTCAAGAGATATTGAATGGAGATCAGGGTGCAGGATA 183135 ||||||||||||||||| | || || || || || || | |||| |||| || | Sbjct 893 ACAAGTGGTTTGGCCTATTGTGGGCCATGATATTTTAAACGCAGATGTTGGTGGTGGTTT 952 Query 183136 TCAAGGTATTAGAATTACATCTGGTTTATTTCAGATGTGGAGAGCATGGGGTATAACAAA 183195 ||||| || |||||| ||||| || || || | ||| | |||| || || |||| Sbjct 953 CCAAGGCCTTCAAATTACTTCTGGATTCTTCCAACTTTGGCGTGCATCAGGAATTACAAG 1012 Query 183196 TGAAACTCAACTAATGGCGCTAGCACTAGGTGCTTTAGTTATGGCAGCAGTTATGTTTAA 183255 |||| ||||| | ||| | |||||| | || ||||| || | |||||| Sbjct 1013 TGAATTACAACTTTACACCACAGCGATTGGTGCTCTTGTGATGGCTGCCGCAATGTTTTT 1072 Query 183256 TGCTGGTGCATTTCATTTTCACGTTGCTGCTCCTAAGTTATCATGGTTTCAGAATGTAGA 183315 || ||| || |||| ||| ||||| || || ||| |||||| || || || || Sbjct 1073 CGCGGGTTGGTTCCATTATCATAAAGCTGCACCAAAATTAGAATGGTTCCAAAACGTTGA 1132 Query 183316 ATCTATGATGAATCATCACCTTGCAGGTTTGCTTGGTCTTGGTTCTTTAGGATGGGCAGG 183375 ||||||| | ||||| || | | ||| | | ||||| || ||||| |||||| || Sbjct 1133 ATCTATGCTCAATCACCATTTAGGTGGTCTTTTAGGTCTAGGGAGTTTAGCATGGGCCGG 1192 Query 183376 ACATTTAATTCATATTTCAATCCCAACTAATA 183407 ||| |||||| ||||| | |||| ||||| Sbjct 1193 TCATCAAATTCACGTTTCATTACCAATTAATA 1224 Score = 170 bits (188), Expect = 2e-37 Identities = 435/653 (67%), Gaps = 18/653 (3%) Strand=Plus/Plus Query 183587 GATTTCCTCACCTTTAAAGGTGGTTTGAATCCTGTAACTGGCAGTCTTTGGATGACAGAT 183646 ||||| || || || |||| || || ||||| ||||| || || | ||| | |||||| Sbjct 1368 GATTTTCTTACATTCCAAGGCGGGTTAAATCCAGTAACAGGTGGTTTATGGCTAACAGAT 1427 Query 183647 ATAGCACATCATCACCTAGCAATAGCAGTTATGTTTATCATTGCAGGTCATATGTATCGC 183706 | | |||||||| | ||||| ||||| | ||| | | || || ||| || | Sbjct 1428 ACTGTTCATCATCATTTGGCAATTGCAGTCTTATTTTTAGTAGCTGGACATCAATACAGA 1487 Query 183707 ACAAACTGGGGTATTGGT--CAATCAATGAAAGAGATATTAGATGGTCAGAATGGTTTCC 183764 ||||| |||||||||||| || | | ||||| || | || | ||| || || || Sbjct 1488 ACAAATTGGGGTATTGGTTCCAGTTTA--AAAGAAATCCTTGAAGCTCACAAAGGG--CC 1543 Query 183765 C---ACAGGGTGTCACACACAGAGGATTATATGAATTTCTAGCAGAATCAAGACATGCAC 183821 | || || | || | |||| | |||||| || || | || | ||||| | Sbjct 1544 CTTTACTGGC-GAAGGTCATAAAGGACTTTATGAAATTTTAACTACTTCCTGGCATGCTC 1602 Query 183822 AACTATCACTGAATCTGGCAATGCTAGGATC--TATCAGTATCATAGTTTCACATCATAT 183879 | || || | ||| | || | | || || ||||| || || ||| | || || || Sbjct 1603 AGTTAGCAATTAATTTAGCTCTTTTTGGTTCGTTATCA--ATTATTGTTGCTCACCACAT 1660 Query 183880 GTATGCAATGCCACCTTATCCATATCTTGGTATTGAATATCCAACAGTAGTAGGATTATT 183939 ||| |||||||| || ||||| ||| | | | || ||| || | | | | || Sbjct 1661 GTACGCAATGCCTCCATATCCTTATTTAGCGACAGATTATGGTACGCAACTTTCACTTTT 1720 Query 183940 CACCCATCATATGTGGATAGGTGGTTTTCTTATTGTGGGTGCATCAGCACATGCTTCAAT 183999 ||| ||||| |||||||| |||||||| |||||| ||||| || ||||| | || Sbjct 1721 CACTCATCACATGTGGATCGGTGGTTTCTGTATTGTTGGTGCGGGTGCTCATGCAGCTAT 1780 Query 184000 TGCTATGATAAGAGACTATAATCCTGTTCAACATATGGGAA--ATGTATTAGATAGAATA 184057 | |||| | | || ||| |||| ||| || || || | ||||| | | Sbjct 1781 TTTTATGGTTCGTGATTATGATCCAA--CAAATAATTATAACAATCTTTTAGACCGTGTT 1838 Query 184058 CTTAAATCTAGAGATGCAATCATCAGTCACTTGAACTGGGTATGCATCTTTTTAGGTTTT 184117 ||| ||||||||| || || ||| || || |||||||| || || || || || Sbjct 1839 CTTCGTCATAGAGATGCGATGATTTCTCATTTAAATTGGGTATGTATTTTCTTGGGCTTC 1898 Query 184118 CATAGTTTTGGTCTTTATATTCACAATGATATTATGAGAGCATTGGGTAGACCTAATGAT 184177 ||||||||||| | || ||||||||||||| ||||| || |||||| | || | || Sbjct 1899 CATAGTTTTGGATTATACATTCACAATGATACGATGAGTGCTTTGGGTCGCCCACAAGAC 1958 Query 184178 CTATTCAGTGATACAGCAATACAATTACAACCTGTATTTGCACAGTCTGTTCA 184230 | || ||| ||||| || ||||||||||| || |||||||| | ||||| Sbjct 1959 ATGTTTTCTGACACAGCGATTCAATTACAACCAGTTTTTGCACAATGGGTTCA 2011 >seq1741 Length=9891 Score = 219 bits (242), Expect = 5e-52 Identities = 265/361 (73%), Gaps = 0/361 (0%) Strand=Plus/Plus Query 191474 GCATTTGATCCAACACAGGATGAGGAAACTTATTCTATGATCACTGCAAACAGATTCTGG 191533 || ||| | ||||| || | ||| ||||| ||||| ||| | || |||||| | |||||| Sbjct 55 GCGTTTAACCCAACTCAAGCTGAAGAAACATATTCAATGGTAACCGCAAACCGTTTCTGG 114 Query 191534 TCACAGATATTTGGTATTGCATTCTCTAACAAAAGATTTCTACACTTCTTGATGTTGTTT 191593 ||||| || |||||| | || || || |||||| | | ||||||| || ||||| ||| Sbjct 115 TCACAAATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTTTTTATGTTATTT 174 Query 191594 GTTCCTGTAATGGGAATGTGGACATCATCAATAGGTATTGTAGGTCTTGCACTTAACTTA 191653 ||||| |||| || | |||| | || ||| |||||||| | || | |||||| Sbjct 175 GTTCCAGTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTTTAAACTTA 234 Query 191654 AGAGCATATGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACC 191713 | || |||||||| || || ||||| || | || || ||||| || ||||| ||||| Sbjct 235 CGTGCTTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAGTTCGAAACT 294 Query 191714 TTCTATACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCATGGATGTCTTCAGTAGAC 191773 |||||||| || || |||||| | || |||||||| | || |||||| || | ||| Sbjct 295 TTCTATACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGAT 354 Query 191774 CAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTACCTAGAGGAAATGCATTGTAA 191833 || |||||||| || |||| ||||| ||||| ||| |||| | ||||| || | ||| Sbjct 355 CAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTAA 414 Query 191834 T 191834 | Sbjct 415 T 415 >seq5501 Length=2247 Score = 196 bits (216), Expect = 6e-45 Identities = 191/246 (78%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 182486 ATGTCTCACGCCGTTAAAATATATGATACTTGCATTGGATGCACACAATGTGTGAAGGCT 182545 ||||| || | || ||||| |||||||| ||||| || || || |||||||| ||| Sbjct 160 ATGTCACATACAGTAAAAATTTATGATACATGCATCGGTTGTACTCAATGTGTTCGTGCT 219 Query 182546 TGTCCATTGGATGTATTAGAAATGGTTCCTTGGGATGGGTGCAAAGCAAAGCAAATTGCT 182605 ||||| ||||| ||||||||||| ||||||||||| |||||||| || ||||| ||| Sbjct 220 TGTCCTACTGATGTTTTAGAAATGGTACCTTGGGATGGCTGCAAAGCTAATCAAATCGCT 279 Query 182606 TCCTCACCTAGAACTGAGGATTGTGTAGGATGTAAGAGATGTGAAACAGCATGTCCTACA 182665 || | || |||||||| |||||||| || ||||| | || ||| | |||||||| || Sbjct 280 TCTGCTCCAAGAACTGAAGATTGTGTTGGCTGTAAACGTTGCGAATCTGCATGTCCAACT 339 Query 182666 GACTTTTTAAGTATTCGTGTTTACTTGGGTGCAGAAACCACAAGAAGCATGGGTCTAGCA 182725 || ||||||||| ||||||| || || || | ||||| || |||| ||||| |||| Sbjct 340 GATTTTTTAAGTGTTCGTGTCTATTTAGGCTCCGAAACAACTCGAAGTATGGGATTAGCT 399 Query 182726 TATTAA 182731 |||||| Sbjct 400 TATTAA 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631364065172840