Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_029066.1 Length=48666 Score E Sequences producing significant alignments: (Bits) Value seq116 105 2e-18 seq1 105 2e-18 >seq116 Length=41094 Score = 105 bits (116), Expect = 2e-18 Identities = 275/415 (66%), Gaps = 32/415 (8%) Strand=Plus/Minus Query 47529 GCGCTGCTGCCTGCGCGGATGTCTAGCCCTGAGGCGGAGATCATGCTGCTGGCTATCACG 47588 |||||| |||| || || ||| | || | |||||| |||||||||||| ||| Sbjct 5720 GCGCTGTTGCCCGCTCGCATGAACACGCCCGCGGCGGATTGCATGCTGCTGGCCATCGGC 5661 Query 47589 CAGCAGGAAGATCC----CGAGCAGCGACGCCGCCAGTGGCCGACCGGGCCGGCCCGCGG 47644 | ||||||| | || || ||| || |||| | ||| ||||| |||||||| Sbjct 5660 CTGCAGGAA-AGCCGCTTCGTGCATCGGCGCCAG-ATCGGC-----GGGCCCGCCCGCGG 5608 Query 47645 GCTGCTCCAGTTCGAGCAGGGC---------------GGCGGCGTGCGTGGCGTGCTGAA 47689 | || |||||| ||||| ||||||||| | |||||| | Sbjct 5607 TTTCTGGCAATTCGAGAAGGGCACCCGCGCCAGCCGCGGCGGCGTGTGGGGCGTGTTCCT 5548 Query 47690 TCACCCATCGAGCCGCGACCA--TGCCCTCCGAGTGTGTGCGGCGCGCGGAGTTGCGCCG 47747 ||| | | ||| | || || || || | |||| ||||||| | || ||| Sbjct 5547 GCACGCGGCCAGCAGGGATCACCTGGCCAC--GCTGTGCAAGGCGCGCAGCGTGGCGGGC 5490 Query 47748 GAGCCGGCTGCTGTGTGGGCTGCTCTTGAGCGTGATGACGTGCTGGCGTTCGCCTTCGGT 47807 || |||| ||| | | || || || ||| || ||||||||||| || | ||| Sbjct 5489 GATCCGGATGCGATCTATGCGGCGCTGGAGTACGACGACGTGCTGGCCGCCGGCGTCGCG 5430 Query 47808 CGGCTGCTGCTATGGACCGATCCGAAGCCGCTGCCAAGCGAGCATGACGCGGCTGGCGG- 47866 ||||||||||| ||||||||||||||| ||||||| | ||| | || ||||| Sbjct 5429 CGGCTGCTGCTCTGGACCGATCCGAAGGCGCTGCCGCCGGTCGGCGACAC-GCAGGCGGC 5371 Query 47867 CTGGGCGCTATATGAGCGCACCTGGCGGCCCGGAAAACCTCATCCGGAGCGCTGG 47921 ||||||||| ||| ||||||||||||||| || || || | ||||| ||||| Sbjct 5370 CTGGGCGCTGTATCTGCGCACCTGGCGGCCGGGCAAGCCCAAGCCGGACAGCTGG 5316 >seq1 Length=201307 Score = 105 bits (116), Expect = 2e-18 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 47780 TGATGACGTGCTGGCGTTCGCCTTCGGTCGGCTGCTGCTATGGACCGATCCGAAGCCGCT 47839 ||| ||||||||||| | | ||| ||||||||||| ||||||||||||||| |||| Sbjct 85289 TGACGACGTGCTGGCCGCAGGCGTCGCGCGGCTGCTGCTGTGGACCGATCCGAAGGCGCT 85348 Query 47840 GCCAAGCGAGCATGACG-CGGCTGGCGGCTGGGCGCTATATGAGCGCACCTGGCGGCCCG 47898 ||| || | |||| |||| | |||||||||||| || ||||||||||||||| | Sbjct 85349 GCCGGCCGTGGGCGACGTCGGC-GCCGGCTGGGCGCTGTACCTGCGCACCTGGCGGCCTG 85407 Query 47899 GAAAACCTCATCCGGAGCGCTGGCCGG 47925 | || || |||| | | |||||||| Sbjct 85408 GCAAGCCGCATCAGCAAACCTGGCCGG 85434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155594818935864