Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq12 93.3 4e-14 seq1162 91.5 1e-13 seq7728 89.7 4e-13 seq1233 87.8 2e-12 >seq12 Length=84225 Score = 93.3 bits (102), Expect = 4e-14 Identities = 95/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | |||||| || || ||| ||| ||||| || || || || || || || || | Sbjct 57 GCGAAGCACCAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCCAGGGTGCGCCC 116 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || |||||||| ||||||||||| || |||||||||||||||| || | || ||| || Sbjct 117 ATCCTCAAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCGGGAGGAATGCCCTCCTT 176 Query 39189 GTCC 39192 |||| Sbjct 177 GTCC 180 >seq1162 Length=13745 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 39053 TCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAAT 39112 ||| ||| || | | ||| | ||||| || || ||| ||| ||||| || || || | Sbjct 13601 TCATGCCGCCACGCAGGCGAAGCACCAGGTGGAGGGTGGACTCCTTTTGGATGTTGTAGT 13660 Query 39113 CGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGG 39172 | || || || || | || |||||||| ||||||||||| || |||||||||||||||| Sbjct 13661 CAGCCAGGGTGCGCCCATCCTCAAGCTGCTTGCCCGCAAAGATCAGACGCTGCTGGTCGG 13720 Query 39173 TGGGCACGCTCTCTTTGTCC 39192 || | || ||| |||||| Sbjct 13721 GAGGAATGCCCTCCTTGTCC 13740 >seq7728 Length=1087 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || | ||| || || |||| || ||||| ||||||||||| Sbjct 239 CTCCTTCTGAATGTTGTAGTCCGAAAGCGTGCGGCCGTCCTCCAGCTGCTTGCCCGCAAA 180 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || |||||||| || | ||| | | || |||||| ||| || || || | | Sbjct 179 GATGAGGCGCTGCTGATCAGGGGGGATCCCTTCCTTGTCCTGGATCTTTTGCTTCACATT 120 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || ||||| | ||| || || | ||||| | || |||||||| || || || Sbjct 119 CTCGATTGTGTCGCTGGGCTCAACATCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTGAC 60 Query 39273 AAAGATTTGCAT 39284 ||||| ||||| Sbjct 59 GAAGATCTGCAT 48 >seq1233 Length=13172 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || |||||| |||||| || || || ||||||||||| || || | Sbjct 13072 GCGCAGCACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAATCGGCAAGGGTGCGGCC 13131 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT 39169 ||| || ||||| ||||||||||| || || |||||||||| Sbjct 13132 GTCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGCTGGT 13172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429503724539087