Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq1741 239 6e-58 seq224 96.9 4e-15 seq5 93.3 5e-14 seq2006 82.4 9e-11 seq1726 82.4 9e-11 >seq1741 Length=9891 Score = 239 bits (264), Expect = 6e-58 Identities = 297/407 (73%), Gaps = 0/407 (0%) Strand=Plus/Plus Query 186567 ACTGTAGAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGAT 186626 |||||||||||||| |||| ||||||||| || |||||||| ||| || || | Sbjct 4 ACTGTAGAAAATACACTTTTTGAAGATGGTGATGGTGCAAACACTTTCCGTGCGTTTAAC 63 Query 186627 ACGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATC 186686 | || |||| |||||||| ||||| ||||| || || ||| | ||||||||||| || Sbjct 64 CCAACTCAAGCTGAAGAAACATATTCAATGGTAACCGCAAACCGTTTCTGGTCACAAATT 123 Query 186687 TTCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTT 186746 || || | || ||| || || |||||| | || || || ||| | |||||||| || Sbjct 124 TTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTTTTTATGTTATTTGTTCCAGTA 183 Query 186747 ATGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTAT 186806 | |||||||||| | | ||||| || | ||| | ||| | ||| | ||||||||| Sbjct 184 ACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTTTAAACTTACGTGCTTAT 243 Query 186807 GACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACC 186866 || || || || || | | || || || |||||||||||||| || |||||||| Sbjct 244 GATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAGTTCGAAACTTTCTATACA 303 Query 186867 AAGAATATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACAT 186926 || ||||| || || || |||||| | ||||| |||||||| | ||||| || ||| Sbjct 304 AAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCAT 363 Query 186927 GAAAACTTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 ||||| ||||||| ||||| || || || ||| | || |||||||| Sbjct 364 GAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCT 410 >seq224 Length=33074 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 19648 CGGGGAATTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCGAG 19707 ||||| ||||||||| ||||||||| ||||||||||||||||| |||||||||||||| Sbjct 10324 CGGGGCCTTAGCTCAGCTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCGAA 10265 Query 19708 TCTCCTATTCTCC 19720 ||||||| |||| Sbjct 10264 TCTCCTAGGCTCC 10252 >seq5 Length=148305 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 167483 CGGGGCGTAGCTCAGTTTGGTAGAGCACTCGCTTTGGGAGCGAGTGGCCGTAGGTTCAAA 167542 ||||||||||||||| |||||||||| | ||||||||||||| | | || ||||||||| Sbjct 79772 CGGGGCGTAGCTCAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAAGTCGCAGGTTCAAA 79713 Query 167543 TCCTATCGCCCCGA 167556 |||| ||||||||| Sbjct 79712 TCCTGTCGCCCCGA 79699 >seq2006 Length=8692 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19748 TTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGAG 19807 |||| | ||||||||||||||||||||| ||||||||||| | ||| |||||||||| Sbjct 7629 TTCCCCGATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGTCGCTGGTTCGAG 7688 Query 19808 CCCAGGTGGAGGAGC 19822 ||||| | | ||||| Sbjct 7689 CCCAGCTCGGGGAGC 7703 >seq1726 Length=9999 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19748 TTCCTCTATAGCTCAGTCGGTAGAGCGAGTGACTGTTAATCACTATGTCCCTGGTTCGAG 19807 |||| | ||||||||||||||||||||| ||||||||||| | ||| |||||||||| Sbjct 3999 TTCCCCGATAGCTCAGTCGGTAGAGCGACGGACTGTTAATCCGCAGGTCGCTGGTTCGAG 4058 Query 19808 CCCAGGTGGAGGAGC 19822 ||||| | | ||||| Sbjct 4059 CCCAGCTCGGGGAGC 4073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622008200735880