Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq1741 273 2e-68 seq224 96.9 4e-15 seq4322 87.8 2e-12 >seq1741 Length=9891 Score = 273 bits (302), Expect = 2e-68 Identities = 307/411 (75%), Gaps = 0/411 (0%) Strand=Plus/Plus Query 165759 ACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACTTTCAAAGCATTTGAT 165818 || ||||| ||||| | | |||||||||||| |||||||||||| || ||| | Sbjct 4 ACTGTAGAAAATACACTTTTTGAAGATGGTGATGGTGCAAACACTTTCCGTGCGTTTAAC 63 Query 165819 AGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAGATT 165878 ||||| | || ||||| ||||| ||||| || || |||||||||||||| || ||| Sbjct 64 CCAACTCAAGCTGAAGAAACATATTCAATGGTAACCGCAAACCGTTTCTGGTCACAAATT 123 Query 165879 TTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCTGTC 165938 |||||| | ||||| || || |||||| | ||||| |||||| | |||||||| || Sbjct 124 TTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTTTTTATGTTATTTGTTCCAGTA 183 Query 165939 ATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCTTAT 165998 | || ||||||| ||| |||||||| | | ||| | || | || | ||||||||| Sbjct 184 ACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGCTTTAAACTTACGTGCTTAT 243 Query 165999 GATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCTATACG 166058 ||||| || || || || ||| | ||||| || ||||| ||||| ||||| |||||||| Sbjct 244 GATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAGTTCGAAACTTTCTATACA 303 Query 166059 AAAAACATCCTCCTTAATGAAGGACTCCGTGCCTGGTTGGCTCCTGTAGACCAACCTCAT 166118 ||||| || || | || ||||| | ||||| ||| ||||| || ||| || |||||| Sbjct 304 AAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCAT 363 Query 166119 GAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGGCAACGCACTTTAA 166169 || || |||| |||||||| || || || ||| | || ||||| |||||| Sbjct 364 GAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCTTTAA 414 >seq224 Length=33074 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18249 GGGGGATTAGCTCAGTTGGTAGAGCACCTGCTTTGCAAGCAGGCTGTCAGGAGTTCGAGT 18308 |||| ||||||||| ||||||||| ||||||||||||||||| |||||||||||||| | Sbjct 10323 GGGGCCTTAGCTCAGCTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCGAAT 10264 Query 18309 CTCCTATTCTCCA 18321 |||||| ||||| Sbjct 10263 CTCCTAGGCTCCA 10251 >seq4322 Length=3425 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/79 (86%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 160902 TTTA-CGGGGTGTAGCGCAGA--GGTAGCGCGGCTGTTTTGGGAACAGCAGGTCGCAGGT 160958 |||| |||| |||||||||| |||||||| ||||||||||||||| ||||||||||| Sbjct 2420 TTTATCGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGT 2361 Query 160959 TCGATCCCTGTCACCCCGA 160977 |||| ||||||| ||||| Sbjct 2360 TCGAATCCTGTCATCCCGA 2342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557598641530680