Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ettlia_20oleoabundans_20[genbank_20GCA_5F001937085.1_202017-01-05] 7,999 sequences; 59,279,863 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq1741 251 9e-62 seq224 87.8 2e-12 seq5 82.4 9e-11 >seq1741 Length=9891 Score = 251 bits (278), Expect = 9e-62 Identities = 304/411 (74%), Gaps = 2/411 (0%) Strand=Plus/Plus Query 179442 GCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTC 179501 || || ||||| || ||||| |||||||| |||| |||| || ||| || || Sbjct 1 GCAACTGTAGAAAATACACTTTTTGAAGATGGTGATGGTGCAAACACTTTCCGTGCGTTT 60 Query 179502 GAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAG 179561 | || || |||| || || || ||||| ||||| || || |||||||||||||| || Sbjct 61 AACCCAACTCAAGCTGAAGAAACATATTCAATGGTAACCGCAAACCGTTTCTGGTCACAA 120 Query 179562 ATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCT 179621 || |||||| | || || || || |||||| |||| || |||||||| |||||||| Sbjct 121 ATTTTTGGTGTAGCTTTTTCAAACAAACGTTGGTTACACTTTTTTATGTTATTTGTTCCA 180 Query 179622 GTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTA-GAGC 179680 || | |||||||||| | |||||| || | ||| | || |||| |||| | || Sbjct 181 GTAACTGGTCTTTGGATGAGTGCTATTGGTGTTGTAGGTTTAGC-TTTAAACTTACGTGC 239 Query 179681 TTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTCTA 179740 |||||| || ||||||||||| || | || || || |||||||||||||| || ||||| Sbjct 240 TTATGATTTCGTTTCACAAGAAATTCGCGCTGCGGAAGATCCTGAGTTCGAAACTTTCTA 299 Query 179741 TACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCAACC 179800 ||| || || || || || || |||||| | |||||||||||||| | ||||| || Sbjct 300 TACAAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCC 359 Query 179801 ACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 |||||||| ||||||| ||||| || || || ||| | || |||||||| Sbjct 360 TCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCTCT 410 >seq224 Length=33074 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 17854 CTCCAGGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGCGGTT 17913 |||| |||| ||||||||| |||||||||||||||||||||||||||||||||| ||| Sbjct 10327 CTCC-GGGGCCTTAGCTCAGCTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTT 10269 Query 17914 CGAGTCCGCTATTCTCCA 17931 ||| || ||| ||||| Sbjct 10268 CGAATCTCCTAGGCTCCA 10251 >seq5 Length=148305 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 158206 CGGGGTGTAGCTCAGTTTGGTAGAGCGCCGTCTTTGGGAGGCGGATGCCGTAGGTTCGAA 158265 ||||| ||||||||| ||||||||||||| ||||||||| ||| | || |||||| || Sbjct 79772 CGGGGCGTAGCTCAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAAGTCGCAGGTTCAAA 79713 Query 158266 TCCTATCACCCCGAC 158280 |||| || ||||||| Sbjct 79712 TCCTGTCGCCCCGAC 79698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596247576733840