Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq20 147 2e-30 seq19 131 2e-25 seq3 93.3 4e-14 seq47 87.8 2e-12 >seq20 Length=1589639 Score = 147 bits (162), Expect = 2e-30 Identities = 144/186 (77%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 117015 GCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCT 117074 |||| ||||| ||||||| ||||| || || || || ||||| || |||||| |||||| Sbjct 1013549 GCAGCGAGGCGACCTTCGGGGAGCGGCTAGTTGCGTTTGCGGCTGTGGAGGGCATCTTCT 1013490 Query 117075 TTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGA 117134 | ||| ||| | | || || ||||||||||| ||||| |||||||||||||| | Sbjct 1013489 TCAGCGGCTCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTCA 1013430 Query 117135 CTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGC 117194 | ||| ||||||||||||| | | |||||||| ||||| |||||||||||| ||| Sbjct 1013429 CCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGGCTGCACACCGACTTTGCCTGCCTGC 1013370 Query 117195 TGTTCA 117200 | |||| Sbjct 1013369 TCTTCA 1013364 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| |||| Sbjct 962858 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 962799 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || ||| ||||||||||||||||||||| ||| ||||| || ||| ||||| || | Sbjct 962798 ACGCTCGCTGACTACAACATCCAGAAGGAGAGCACCCTGCACCTGGTGCTGCGCCTGCGC 962739 Query 40912 GGCGGC 40917 || ||| Sbjct 962738 GGTGGC 962733 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| |||| Sbjct 965505 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 965446 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || ||| ||||||||||||||||||||| ||| ||||| || ||| ||||| || | Sbjct 965445 ACGCTCGCTGACTACAACATCCAGAAGGAGAGCACCCTGCACCTGGTGCTGCGCCTGCGC 965386 Query 40912 GGCGGC 40917 || ||| Sbjct 965385 GGTGGC 965380 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| |||| Sbjct 965938 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 965879 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || ||| ||||||||||||||||||||| ||| ||||| || ||| ||||| || | Sbjct 965878 ACGCTCGCTGACTACAACATCCAGAAGGAGAGCACCCTGCACCTGGTGCTGCGCCTGCGC 965819 Query 40912 GGCGGC 40917 || ||| Sbjct 965818 GGTGGC 965813 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| |||| Sbjct 966371 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 966312 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || ||| ||||||||||||||||||||| ||| ||||| || ||| ||||| || | Sbjct 966311 ACGCTCGCTGACTACAACATCCAGAAGGAGAGCACCCTGCACCTGGTGCTGCGCCTGCGC 966252 Query 40912 GGCGGC 40917 || ||| Sbjct 966251 GGTGGC 966246 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| |||| Sbjct 968358 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 968299 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || ||| ||||||||||||||||||||| ||| ||||| || ||| ||||| || | Sbjct 968298 ACGCTCGCTGACTACAACATCCAGAAGGAGAGCACCCTGCACCTGGTGCTGCGCCTGCGC 968239 Query 40912 GGCGGC 40917 || ||| Sbjct 968238 GGTGGC 968233 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 116680 CGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCG 116739 ||||||||| ||||| | | |||| || |||||||| |||||||| |||||| Sbjct 1014351 CGAGGAGGTCGACCTTGGCGATGACATGAAGCACTGGGAGAAGCTGAACGACGGCGAGCG 1014292 Query 116740 CCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAA 116799 ||| ||||| |||||||| ||||| ||||| | ||||||||||| ||||||||||| Sbjct 1014291 CCACTTCATTTCTCACGTGCTCGCCTTCTTCGCGTCAAGCGACGGCATTGTCAACGAGAA 1014232 Query 116800 TCT 116802 || Sbjct 1014231 CCT 1014229 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/208 (71%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 117218 CCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTC 117277 |||| || ||||||||| | ||||| ||||||| |||||||||||||||||| || Sbjct 1013154 CCGA-CGAGGCGCGCGTGCTGCAGATCATCACCGAGGCGGTCGCCATCGAGCAGGAGTTT 1013096 Query 117278 CTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATA 117336 ||| || |||||||||||| ||| | || | || ||| | |||| || || Sbjct 1013095 TGCACGGACGCGCTGCCGGTGGACCTGATCGGCATGAA-CGCGCGCCTGATGGGCCAGTA 1013037 Query 117337 CATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACAC 117396 ||| |||| || || ||| ||||||| | | ||||| | |||||||||||| Sbjct 1013036 CATTCAGTTTGTGGCGGACCGGCTGCTCGTGGCGCTGGGTAACCAGAAGCACTACAACGT 1012977 Query 117397 GCCCAACCCGCTGGACTTTATGAACCTC 117424 | ||||||| | ||||| ||| | ||| Sbjct 1012976 GGCCAACCCCTTTGACTTCATGGAGCTC 1012949 >seq19 Length=1619492 Score = 131 bits (144), Expect = 2e-25 Identities = 104/125 (83%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || ||||||| ||||||||| |||||||| |||| |||| Sbjct 1128641 GGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGGCGC 1128700 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || ||| |||||||||||||||||||||| ||| || || || ||| ||||| || | Sbjct 1128701 ACGCTCGCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTGGTGCTGCGCCTGCGA 1128760 Query 40912 GGCGG 40916 ||||| Sbjct 1128761 GGCGG 1128765 Score = 127 bits (140), Expect = 2e-24 Identities = 100/120 (83%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || ||||||| ||||||||| |||||||| |||| |||| Sbjct 1129481 GGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGGCGC 1129540 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 || ||| |||||||||||||||||||||| ||| || || || ||| ||||| | ||| Sbjct 1129541 ACGCTCGCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTGGTGCTGCGCCTCAGG 1129600 >seq3 Length=4638507 Score = 93.3 bits (102), Expect = 4e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 117081 GCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCA 117140 |||| ||| | | || || ||||||||||| ||| |||| |||||||||||| | ||| Sbjct 3971344 GCAGCTTCTGCTCGATCTTCTGGCTCAAGAAGCGCTGCCTGATGCCCGGCCTGTCCTTCT 3971285 Query 117141 GCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 |||| ||||||| | | |||||||| ||||| |||||||| ||||| Sbjct 3971284 CGAACGTGCTCATCAGCCGCGACGAGGGGCTGCACTGCGACTTCGCCTG 3971236 >seq47 Length=1007904 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 || ||||| |||||||||| || || |||| || ||||| |||||||| |||| ||| Sbjct 1002949 GGTATCCCTCCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGTCGC 1002890 Query 40852 ACCCTCAACGACTACAACATCCAGAAGG 40879 ||||| |||||||||||||||||||| Sbjct 1002889 ACCCTGGCCGACTACAACATCCAGAAGG 1002862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515203917310480