Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09]
2,373 sequences; 148,806,073 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq20 147 2e-30
seq19 131 2e-25
seq3 93.3 4e-14
seq47 87.8 2e-12
>seq20
Length=1589639
Score = 147 bits (162), Expect = 2e-30
Identities = 144/186 (77%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 117015 GCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCT 117074
|||| ||||| ||||||| ||||| || || || || ||||| || |||||| ||||||
Sbjct 1013549 GCAGCGAGGCGACCTTCGGGGAGCGGCTAGTTGCGTTTGCGGCTGTGGAGGGCATCTTCT 1013490
Query 117075 TTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGA 117134
| ||| ||| | | || || ||||||||||| ||||| |||||||||||||| |
Sbjct 1013489 TCAGCGGCTCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTCA 1013430
Query 117135 CTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGC 117194
| ||| ||||||||||||| | | |||||||| ||||| |||||||||||| |||
Sbjct 1013429 CCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGGCTGCACACCGACTTTGCCTGCCTGC 1013370
Query 117195 TGTTCA 117200
| ||||
Sbjct 1013369 TCTTCA 1013364
Score = 123 bits (136), Expect = 3e-23
Identities = 103/126 (82%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851
||||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| ||||
Sbjct 962858 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 962799
Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911
|| ||| ||||||||||||||||||||| ||| ||||| || ||| ||||| || |
Sbjct 962798 ACGCTCGCTGACTACAACATCCAGAAGGAGAGCACCCTGCACCTGGTGCTGCGCCTGCGC 962739
Query 40912 GGCGGC 40917
|| |||
Sbjct 962738 GGTGGC 962733
Score = 123 bits (136), Expect = 3e-23
Identities = 103/126 (82%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851
||||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| ||||
Sbjct 965505 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 965446
Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911
|| ||| ||||||||||||||||||||| ||| ||||| || ||| ||||| || |
Sbjct 965445 ACGCTCGCTGACTACAACATCCAGAAGGAGAGCACCCTGCACCTGGTGCTGCGCCTGCGC 965386
Query 40912 GGCGGC 40917
|| |||
Sbjct 965385 GGTGGC 965380
Score = 123 bits (136), Expect = 3e-23
Identities = 103/126 (82%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851
||||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| ||||
Sbjct 965938 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 965879
Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911
|| ||| ||||||||||||||||||||| ||| ||||| || ||| ||||| || |
Sbjct 965878 ACGCTCGCTGACTACAACATCCAGAAGGAGAGCACCCTGCACCTGGTGCTGCGCCTGCGC 965819
Query 40912 GGCGGC 40917
|| |||
Sbjct 965818 GGTGGC 965813
Score = 123 bits (136), Expect = 3e-23
Identities = 103/126 (82%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851
||||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| ||||
Sbjct 966371 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 966312
Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911
|| ||| ||||||||||||||||||||| ||| ||||| || ||| ||||| || |
Sbjct 966311 ACGCTCGCTGACTACAACATCCAGAAGGAGAGCACCCTGCACCTGGTGCTGCGCCTGCGC 966252
Query 40912 GGCGGC 40917
|| |||
Sbjct 966251 GGTGGC 966246
Score = 123 bits (136), Expect = 3e-23
Identities = 103/126 (82%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851
||||||||| |||||||||| || || |||| ||| ||||| |||||||| |||| ||||
Sbjct 968358 GGCATCCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGGCGC 968299
Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911
|| ||| ||||||||||||||||||||| ||| ||||| || ||| ||||| || |
Sbjct 968298 ACGCTCGCTGACTACAACATCCAGAAGGAGAGCACCCTGCACCTGGTGCTGCGCCTGCGC 968239
Query 40912 GGCGGC 40917
|| |||
Sbjct 968238 GGTGGC 968233
Score = 96.9 bits (106), Expect = 4e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 116680 CGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCG 116739
||||||||| ||||| | | |||| || |||||||| |||||||| ||||||
Sbjct 1014351 CGAGGAGGTCGACCTTGGCGATGACATGAAGCACTGGGAGAAGCTGAACGACGGCGAGCG 1014292
Query 116740 CCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAA 116799
||| ||||| |||||||| ||||| ||||| | ||||||||||| |||||||||||
Sbjct 1014291 CCACTTCATTTCTCACGTGCTCGCCTTCTTCGCGTCAAGCGACGGCATTGTCAACGAGAA 1014232
Query 116800 TCT 116802
||
Sbjct 1014231 CCT 1014229
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/208 (71%), Gaps = 3/208 (1%)
Strand=Plus/Minus
Query 117218 CCGAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTC 117277
|||| || ||||||||| | ||||| ||||||| |||||||||||||||||| ||
Sbjct 1013154 CCGA-CGAGGCGCGCGTGCTGCAGATCATCACCGAGGCGGTCGCCATCGAGCAGGAGTTT 1013096
Query 117278 CTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATA 117336
||| || |||||||||||| ||| | || | || ||| | |||| || ||
Sbjct 1013095 TGCACGGACGCGCTGCCGGTGGACCTGATCGGCATGAA-CGCGCGCCTGATGGGCCAGTA 1013037
Query 117337 CATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACAC 117396
||| |||| || || ||| ||||||| | | ||||| | ||||||||||||
Sbjct 1013036 CATTCAGTTTGTGGCGGACCGGCTGCTCGTGGCGCTGGGTAACCAGAAGCACTACAACGT 1012977
Query 117397 GCCCAACCCGCTGGACTTTATGAACCTC 117424
| ||||||| | ||||| ||| | |||
Sbjct 1012976 GGCCAACCCCTTTGACTTCATGGAGCTC 1012949
>seq19
Length=1619492
Score = 131 bits (144), Expect = 2e-25
Identities = 104/125 (83%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851
||||||||| | |||||||| || ||||||| ||||||||| |||||||| |||| ||||
Sbjct 1128641 GGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGGCGC 1128700
Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911
|| ||| |||||||||||||||||||||| ||| || || || ||| ||||| || |
Sbjct 1128701 ACGCTCGCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTGGTGCTGCGCCTGCGA 1128760
Query 40912 GGCGG 40916
|||||
Sbjct 1128761 GGCGG 1128765
Score = 127 bits (140), Expect = 2e-24
Identities = 100/120 (83%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851
||||||||| | |||||||| || ||||||| ||||||||| |||||||| |||| ||||
Sbjct 1129481 GGCATCCCCCCCGACCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTGGAGGACGGGCGC 1129540
Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911
|| ||| |||||||||||||||||||||| ||| || || || ||| ||||| | |||
Sbjct 1129541 ACGCTCGCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTGGTGCTGCGCCTCAGG 1129600
>seq3
Length=4638507
Score = 93.3 bits (102), Expect = 4e-14
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 117081 GCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCA 117140
|||| ||| | | || || ||||||||||| ||| |||| |||||||||||| | |||
Sbjct 3971344 GCAGCTTCTGCTCGATCTTCTGGCTCAAGAAGCGCTGCCTGATGCCCGGCCTGTCCTTCT 3971285
Query 117141 GCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189
|||| ||||||| | | |||||||| ||||| |||||||| |||||
Sbjct 3971284 CGAACGTGCTCATCAGCCGCGACGAGGGGCTGCACTGCGACTTCGCCTG 3971236
>seq47
Length=1007904
Score = 87.8 bits (96), Expect = 2e-12
Identities = 72/88 (82%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851
|| ||||| |||||||||| || || |||| || ||||| |||||||| |||| |||
Sbjct 1002949 GGTATCCCTCCGGACCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGTCGC 1002890
Query 40852 ACCCTCAACGACTACAACATCCAGAAGG 40879
||||| ||||||||||||||||||||
Sbjct 1002889 ACCCTGGCCGACTACAACATCCAGAAGG 1002862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515203917310480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |