Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq20 113 4e-20 >seq20 Length=1589639 Score = 113 bits (124), Expect = 4e-20 Identities = 124/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 ||| || || | || ||||| || | ||||| || |||||||||||| ||||||| || Sbjct 867474 CATGAAGAGGTTGGGGATCCAAAGGCCATAGAAGAGGTCGCGGGCGCGCGCCTCCTCCTT 867415 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 |||| |||||| || |||| ||||| |||||||| || ||||| ||||| | ||| Sbjct 867414 GCCGTGGTTCTTGCGCAGGTCCAGGAAGTCGAACACGTCAGCGTGCCAGGGCTCCATGTA 867355 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTA 23517 | ||||||||||||| | ||| |||||||| || ||||| Sbjct 867354 GATGGCAAACGCGCCCTTGCGCTTGCCACCGCCCTGGTCCACGTA 867310 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 22142 TTGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATC 22201 |||||||| || || |||||||| ||||| || ||| | ||| ||||| || || | | Sbjct 870079 TTGGTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGC 870020 Query 22202 GACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCG 22261 ||||| | || || | | || | |||| | || ||||||||||| ||| ||| Sbjct 870019 GACGTGAGCTTGCCGAAGTTGGGGTCGGGCATGAAGACGTTGAACGACTGCGACTGGTCG 869960 Query 22262 ATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACG 22321 || | || || || ||||||||||| | | || || ||| | || ||||| || Sbjct 869959 ATGTAGGCGCCGCGGTCGGCGGCCATGTCCACCAGCGTGCGCTGCTTGATCTCCCACACC 869900 Query 22322 GTCTTGTACAG 22332 ||||||||||| Sbjct 869899 GTCTTGTACAG 869889 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 57956 GGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGG 58015 ||| || |||| ||| ||||| | ||||| || || || || || || ||||| || Sbjct 1013542 GGCGACCTTCGGGGAGCGGCTAGTTGCGTTTGCGGCTGTGGAGGGCATCTTCTTCAGCGG 1013483 Query 58016 CAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTA 58074 | || ||| | || || ||| | ||||| ||||| || ||||||||||| || || Sbjct 1013482 CTCGTTCTGCT-CGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTCT 1013424 Query 58075 GCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 ||||||| | || ||||||||||| || || || || ||||| ||||| Sbjct 1013423 CCAACGAGCTCATCAGCCGCGACGAGGGGCTGCACACCGACTTTGCCTGCCT 1013372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445753177454160