Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09]
2,373 sequences; 148,806,073 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq20 113 4e-20
>seq20
Length=1589639
Score = 113 bits (124), Expect = 4e-20
Identities = 124/165 (75%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412
||| || || | || ||||| || | ||||| || |||||||||||| ||||||| ||
Sbjct 867474 CATGAAGAGGTTGGGGATCCAAAGGCCATAGAAGAGGTCGCGGGCGCGCGCCTCCTCCTT 867415
Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472
|||| |||||| || |||| ||||| |||||||| || ||||| ||||| | |||
Sbjct 867414 GCCGTGGTTCTTGCGCAGGTCCAGGAAGTCGAACACGTCAGCGTGCCAGGGCTCCATGTA 867355
Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTA 23517
| ||||||||||||| | ||| |||||||| || |||||
Sbjct 867354 GATGGCAAACGCGCCCTTGCGCTTGCCACCGCCCTGGTCCACGTA 867310
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 22142 TTGGTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATC 22201
|||||||| || || |||||||| ||||| || ||| | ||| ||||| || || | |
Sbjct 870079 TTGGTGCGCAGGTAGTACATGCCGGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCAGC 870020
Query 22202 GACGTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCG 22261
||||| | || || | | || | |||| | || ||||||||||| ||| |||
Sbjct 870019 GACGTGAGCTTGCCGAAGTTGGGGTCGGGCATGAAGACGTTGAACGACTGCGACTGGTCG 869960
Query 22262 ATAAACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACG 22321
|| | || || || ||||||||||| | | || || ||| | || ||||| ||
Sbjct 869959 ATGTAGGCGCCGCGGTCGGCGGCCATGTCCACCAGCGTGCGCTGCTTGATCTCCCACACC 869900
Query 22322 GTCTTGTACAG 22332
|||||||||||
Sbjct 869899 GTCTTGTACAG 869889
Score = 82.4 bits (90), Expect = 7e-11
Identities = 123/172 (72%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 57956 GGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGG 58015
||| || |||| ||| ||||| | ||||| || || || || || || ||||| ||
Sbjct 1013542 GGCGACCTTCGGGGAGCGGCTAGTTGCGTTTGCGGCTGTGGAGGGCATCTTCTTCAGCGG 1013483
Query 58016 CAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTA 58074
| || ||| | || || ||| | ||||| ||||| || ||||||||||| || ||
Sbjct 1013482 CTCGTTCTGCT-CGATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTCT 1013424
Query 58075 GCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126
||||||| | || ||||||||||| || || || || ||||| |||||
Sbjct 1013423 CCAACGAGCTCATCAGCCGCGACGAGGGGCTGCACACCGACTTTGCCTGCCT 1013372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445753177454160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |