Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq20 107 3e-18 >seq20 Length=1589639 Score = 107 bits (118), Expect = 3e-18 Identities = 140/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAG--ACGCTGATCGATATGGCTGCCGACAGAG 98097 |||||||| || |||||||| | | || |||||| | || ||||| |||||| | | Sbjct 869892 TACAAGACGGTGTGGGAGAT--CAAGCAGCGCACGCTGGTGGACATGGCCGCCGACCGCG 869949 Query 98098 GTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTC 98157 | | |||||| |||||| || |||||||| | | | | |||| |||| || | | Sbjct 869950 GCGCCTACATCGACCAGTCGCAGTCGTTCAACGTCTTCATGCCCGACCCCAACTTCGGCA 870009 Query 98158 GTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATC 98217 | || ||| | ||||| ||||| ||| ||||||||||||||| ||||||||||| | Sbjct 870010 AGCTCACGTCGCTGCACTTCTACGCCTGGCGCAAGGGCCTCAAGACCGGCATGTACTACC 870069 Query 98218 TGAGAACAAAGT 98229 || | || |||| Sbjct 870070 TGCGCACCAAGT 870081 Score = 89.7 bits (98), Expect = 8e-13 Identities = 110/148 (74%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTT-CGGGTAGTTTTGCGGCCATCTT 125485 || || || || || || || |||||||||||||| ||| | ||| ||| | ||||| Sbjct 1013523 CTAGTTGCGTTTGCGGCTGTGGAGGGCATCTTCTTCAGCGGCTCGTTCTGCT-CGATCTT 1013465 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 ||||||||||||||||| ||||||||||| || || | |||||| | || || Sbjct 1013464 CTGGCTCAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATCAGCCG 1013405 Query 125546 AGACGAGGGCCTACACTGTGACTTTGCC 125573 |||||||| || ||| ||||||||| Sbjct 1013404 CGACGAGGGGCTGCACACCGACTTTGCC 1013377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741037218331480