Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gonium_20pectorale_20[genbank_20GCA_5F001584585.1_202016-03-09] 2,373 sequences; 148,806,073 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq20 104 2e-17 seq47 89.7 5e-13 seq19 87.8 2e-12 >seq20 Length=1589639 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 || ||| || |||||| |||||||| | || ||| || |||| || | ||| || || Sbjct 869594 GTGCTGGTTCACGACCGTGAACTCGCCAGACAGCACGCGGCGCACGTAGATGTTGGAGGT 869535 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 | |||| ||||| ||||||| ||||||||||| || | |||| |||||||||||| Sbjct 869534 GTAGGGCTCAAAGCACTCGTTGTTGCCCAGGATCTGCGACGTCGAGGCGGTGGGCATGGG 869475 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCT 145202 |||||||| | |||||||| ||||||| Sbjct 869474 CGCCACCAGCAGGCTATTGCGCACACCGTGCT 869443 Score = 100 bits (110), Expect = 3e-16 Identities = 137/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 46353 CGTGCTGAGCATGTTCAAGGAGGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACT 46412 ||||||| || ||| |||||||| ||||| ||| ||||||||| |||| ||| || Sbjct 1013141 CGTGCTGCAGATCATCACCGAGGCGGTCGCCATCGAGCAGGAGTTTTGCACGGACGCGCT 1013082 Query 46413 GCCCGCTGCCCTGCTGGGCATGAACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGC 46472 ||| | | |||| | ||||||||||| | ||| || | ||||| ||||||| || Sbjct 1013081 GCCGGTGGACCTGATCGGCATGAACGCGCGCCTGATGGGCCAGTACATTCAGTTTGTGGC 1013022 Query 46473 GGACCGACTGCTCGTGCAGCT---TCACCAGCCGAAGCATTTTCACGCGCGCAATCCATT 46529 |||||| ||||||||| ||| | |||| |||||| | ||| | ||| || || Sbjct 1013021 GGACCGGCTGCTCGTGGCGCTGGGTAACCA---GAAGCACTACAACGTGGCCAACCCCTT 1012965 Query 46530 TGAGTTTATG 46539 ||| || ||| Sbjct 1012964 TGACTTCATG 1012955 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | ||| |||||| || |||||||| || Sbjct 962733 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGC 962792 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| | |||||||||||||| || Sbjct 962793 GAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 962852 Query 131127 GATTCCT 131133 ||| ||| Sbjct 962853 GATGCCT 962859 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | ||| |||||| || |||||||| || Sbjct 965380 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGC 965439 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| | |||||||||||||| || Sbjct 965440 GAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 965499 Query 131127 GATTCCT 131133 ||| ||| Sbjct 965500 GATGCCT 965506 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | ||| |||||| || |||||||| || Sbjct 965813 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGC 965872 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| | |||||||||||||| || Sbjct 965873 GAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 965932 Query 131127 GATTCCT 131133 ||| ||| Sbjct 965933 GATGCCT 965939 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | ||| |||||| || |||||||| || Sbjct 966246 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGC 966305 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| | |||||||||||||| || Sbjct 966306 GAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 966365 Query 131127 GATTCCT 131133 ||| ||| Sbjct 966366 GATGCCT 966372 Score = 98.7 bits (108), Expect = 9e-16 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | ||| |||||| || |||||||| || Sbjct 968233 GCCACCGCGCAGGCGCAGCACCAGGTGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGC 968292 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| | |||||||||||||| || Sbjct 968293 GAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 968352 Query 131127 GATTCCT 131133 ||| ||| Sbjct 968353 GATGCCT 968359 Score = 86.0 bits (94), Expect = 6e-12 Identities = 130/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 46133 GCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttt 46192 ||||| ||||| |||| ||||| | || || |||||| |||||||||| |||| | Sbjct 1013549 GCAGCGAGGCGACCTTCGGGGAGCGGCTAGTTGCGTTTGCGGCTGTGGAGGGCATCTTCT 1013490 Query 46193 tttCTGGCA-GTTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCT 46250 | ||| ||| ||| | ||||| | |||| || | || | ||||||||||||| Sbjct 1013489 TCAGCGGCTCGTTCTGCT-CGATCTTCTGGCTCAAGAAGCGCGGTC-TCATGCCCGGCCT 1013432 Query 46251 GACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT 46310 || || ||||||||| || ||||||||||| ||||| || |||||||| || || Sbjct 1013431 CACCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGGCTGCACACCGACTTTGCCTGCCT 1013372 >seq47 Length=1007904 Score = 89.7 bits (98), Expect = 5e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| ||| || |||||| |||||| ||||||||||| || ||| Sbjct 1002862 CCTTCTGGATGTTGTAGTCGGCCAGGGTGCGACCGTCCTCCAGCTGCTTGCCGGCAAAGA 1002921 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 | | ||||||||||||||||||||| ||| Sbjct 1002922 TCAGACGCTGCTGGTCCGGAGGGATACCT 1002950 >seq19 Length=1619492 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| |||||||| | || | ||| |||||| || |||||||| ||| Sbjct 1128765 CCGCCTCGCAGGCGCAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCG 1128706 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | ||||||||||| || ||| Sbjct 1128705 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGG 1128646 Query 131128 ATTCCT 131133 || ||| Sbjct 1128645 ATGCCT 1128640 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||||||| | || | ||| |||||| || |||||||| ||| | |||||| | Sbjct 1129593 CGCAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCG 1129534 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 ||||| ||||||||||| ||| |||| | ||||||||||| || ||||| ||| Sbjct 1129533 TCCTCCAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCGGGGGGGATGCCT 1129480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471998798920320